Pairwise Alignments

Query, 721 a.a., thiamin biosynthesis protein ThiC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 622 a.a., Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  786 bits (2029), Expect = 0.0
 Identities = 400/600 (66%), Positives = 463/600 (77%), Gaps = 22/600 (3%)

Query: 41  PNSQKLYLQGSRADLRVGMRQILQTDTRIGGRAAAPNVEKNPPIPVYDCAGPYSDPAAQI 100
           P S+K+++ G +  + V MR+I  T+   G R           + VYD +GPYS+P A I
Sbjct: 20  PASRKIHVSGQQPGVSVPMREIALTN---GER-----------VVVYDTSGPYSEPTAAI 65

Query: 101 NVRQGLAKLRLPWIIERQDTEVLDCTTSDFTQQRLKDDGLDHLRFEA---GSSAIIR-PR 156
           +V +GL  +R  WI  R DTE             +K +  D  R EA    ++ + R PR
Sbjct: 66  DVTRGLPDVRGAWIAARGDTETYAGRARQALDDGVKHEARDAERIEALRASATGLQRAPR 125

Query: 157 RALPGKRVSQLHYARQGIITPEMEYVAIRENMA---LAD-VQDEILNRRGQGESFGAVIG 212
           RA  G  V+Q+HYAR+GI+TPEMEYVA+REN     +A+ + D     R +G   GA I 
Sbjct: 126 RARSGLNVTQMHYARRGIVTPEMEYVAVRENGQREWMAEYLGDAAREARLRGNPMGARIP 185

Query: 213 KPITPEFVRDEIARGRAIIPLNINHPEAEPMTIGRNFLVKVNANIGNSAVTSSIEEEVEK 272
           + ITPEFVRDE+ARGRAIIP NINHPE EPM IGRNFLVKVNANIGNSAVTSSIEEEV+K
Sbjct: 186 EIITPEFVRDEVARGRAIIPANINHPEVEPMAIGRNFLVKVNANIGNSAVTSSIEEEVDK 245

Query: 273 LVWSTRWGADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIYQALEKVNGVAEHLTWEVF 332
           LVW+ RWGAD VMDLSTGR IH TR+WI+RNSPVPIGTVPIYQALEKV GVAE LTW ++
Sbjct: 246 LVWAIRWGADNVMDLSTGRNIHTTRDWIVRNSPVPIGTVPIYQALEKVGGVAEDLTWAIY 305

Query: 333 RDTLIEQAEQGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCLSHHQENFLYTH 392
           RDTLIEQAEQGVDYFTIHAGV L ++ +TA R TGIVSRGGSIMAKWC++HHQE+FLYTH
Sbjct: 306 RDTLIEQAEQGVDYFTIHAGVRLPFIHLTANRRTGIVSRGGSIMAKWCITHHQESFLYTH 365

Query: 393 FREICELCVAYDVSLSLGDGMRPGSIADANDEAQFAELETLGELVNIAWEYDVQTIIEGP 452
           F EICE+  AYDVS SLGDG+RPGS +DANDEAQFAEL TLGEL   AW++DVQT+IEGP
Sbjct: 366 FDEICEIMKAYDVSFSLGDGLRPGSASDANDEAQFAELRTLGELTQTAWKHDVQTMIEGP 425

Query: 453 GHIPMQLIKENMDKQLIHCAEAPFYTLGPQITDIAPGYDHFTSGIGAAMIAWYGCAMLCY 512
           GH+PM LI+ NMD+QL  C EAPFYTLGP   DIAPGYDH  S IGAAMI W G AMLCY
Sbjct: 426 GHVPMHLIQANMDEQLKRCHEAPFYTLGPLTIDIAPGYDHIASAIGAAMIGWMGTAMLCY 485

Query: 513 VTPKEHLGLPNKQDVKQGLIAYKIAAHAADIAKGHPGAQIRDNALSKARFEFRWEDQYNL 572
           VTPKEHLGLP++ DVKQGLIAYKIAAHAADIAKGHPGA+ RD+A+SKARFEFRW DQ+NL
Sbjct: 486 VTPKEHLGLPDRDDVKQGLIAYKIAAHAADIAKGHPGARARDDAMSKARFEFRWHDQFNL 545

Query: 573 GLDPDTARAYHDESLPQESAKVAHFCSMCGPKFCSMKITQDVRDYAASLEADAKAQSLAA 632
           GLDPDTAR +HDE+LP++S+K AHFCSMCGPKFCSMKITQDVRDYA    A   A+  AA
Sbjct: 546 GLDPDTARDFHDETLPKDSSKEAHFCSMCGPKFCSMKITQDVRDYAEQGMAGKSAEFKAA 605