Pairwise Alignments

Query, 306 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 309 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

 Score =  104 bits (259), Expect = 3e-27
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 11/301 (3%)

Query: 4   AKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSL 63
           A+L+R+ +  +     + +T SVT + +RL L+  +VS  L++LR S  D LF R  + L
Sbjct: 10  AELARLDLNLVRVFVAIYETRSVTLAGDRLDLTQPTVSHALARLRTSYGDRLFSRGSSGL 69

Query: 64  VATPLAKRLGPSVQQMINDMNQIMSQD-AFTPTNYEGHFSLAMRESTFELLAAKLSAHIL 122
           V T L  +L P+++  +  +   + +  AF  ++    F +AM +         L   + 
Sbjct: 70  VPTALCDQLYPTLKDSLLRIEATLEETRAFDASHSTRRFRIAMSDIGALYFTPPLLRRLQ 129

Query: 123 SLAPHIHLDIYSKDNIGFDGLINGSLDFVL--LPHDLSQPNPSQDDLVWETLFSDEMICL 180
            LAP + +DI        D L +G+LD  +  +P  L+             LF +  +CL
Sbjct: 130 RLAPLVQVDITQPSPSLIDDLNSGALDLAVGNMPELLTSTRTL-------ALFEEHYVCL 182

Query: 181 MNSSHPLAKQSHISFDDYLSYSHIGITDTDLSTPYFDILLAQQSKKRAVPISVPDFGSAA 240
           M   HP  +Q  ++ D++    H+ +T         D +LA Q   R +   +P F    
Sbjct: 183 MAKDHPTIRQ-RMTTDEFARARHVFVTSPVSGHALVDGILAGQGVVRNIVARIPQFSVVP 241

Query: 241 LMCHHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSLVWHKQSMKDPALRWLYEQ 300
            +   ++LL    RR A++     G+    +P+        + WH +  ++ A RWL +Q
Sbjct: 242 YVVADTDLLVVIPRRVAALFVAHGGMKALPIPVPLPHFEVRMHWHVRHQENSAHRWLRDQ 301

Query: 301 I 301
           +
Sbjct: 302 V 302