Pairwise Alignments

Query, 306 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 305 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  110 bits (274), Expect = 5e-29
 Identities = 86/293 (29%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 6   LSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSLVA 65
           L RI +  L+ L  +L    VT +AERL LS  +VS  L++LRD L D L  R G  LV 
Sbjct: 10  LRRIDLNLLVILDALLSEQQVTRAAERLHLSQPAVSHALARLRDLLGDPLLVRQGGRLVP 69

Query: 66  TPLAKRLGPSVQQMINDMNQIMSQDAFTPTNYEGHFSLAMRESTFELLAAKLSAHILSLA 125
           T  A  L   + + +  +  +++ + F P + +  F LAM + +  +    L   +   A
Sbjct: 70  TARALELATPLAEALAQVQALLAPNRFDPASAKRRFRLAMSDYSAAIFLPDLVRTLRREA 129

Query: 126 PHIHLDIYSKDNIGF-DGLINGSLDFVLLPHDLSQPNPSQDDLVWETLFSDEMICLMNSS 184
           P I L I      G  +G++NG LD   L   +    P+  +L    LF +   CL++  
Sbjct: 130 PGIDLQIIQASREGMVEGVLNGDLD---LAAGVFPDMPA--ELRTTPLFDEHYTCLVD-R 183

Query: 185 HPLAKQSHISFDDYLSYSHIGITDTDLSTPYFDILLAQQSKKRAVPISVPDFGSAALMCH 244
           + L     +    YLS  H+ +      TP  +  L    ++R V IS+P +G A  +  
Sbjct: 184 NSLPASGALDLPTYLSRPHVLLEMRGSGTPEIERALTAIRQRRHVAISLPHWGVAPQLIQ 243

Query: 245 HSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSLVWHKQSMKDPALRWL 297
            ++L+ T S R       A  L V   P      A+ L WH +   D  L+WL
Sbjct: 244 GTDLILTVSSRGLLNIDHAHLLAVPP-PFHIPSFAFELAWHARRGGDAGLQWL 295