Pairwise Alignments

Query, 585 a.a., Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) from Shewanella oneidensis MR-1

Subject, 598 a.a., acyl-CoA dehydrogenase from Agrobacterium fabrum C58

 Score =  469 bits (1207), Expect = e-136
 Identities = 264/607 (43%), Positives = 368/607 (60%), Gaps = 31/607 (5%)

Query: 1   MNPYQAPLADMRFLLEQVFDAPNTWSQLPDIAEMVDMDTANAILEEAAKISAQLIHPLNR 60
           M  Y+AP+ D  F+L  V      ++ LP   +    D   AI  EAAK++ + + PLN 
Sbjct: 1   MPVYKAPVKDTLFILNDVLGLER-YNNLPGFEDATP-DMIEAITGEAAKLAEERLFPLNL 58

Query: 61  AGDEQGVLHQDN-CVITPEGYKAVYDQYSQGGWVGLCGEPEFGGMGMPKMLGVLVDEMAY 119
           +GD+QG    D+  V  P+G+KA YD Y +GGW+GL    EFGG G+P  L   + E   
Sbjct: 59  SGDQQGCKRADDGSVSVPDGFKAAYDAYCEGGWIGLAVPSEFGGQGLPYTLHAAIGEYMS 118

Query: 120 SACNAFTLYGSLTAGAALCINAHGSEVLKQAYLPKLYSGEWAGAMDMTEPQAGSDLRNIR 179
           SA  +  +Y  LT GA   +  HG++  K+ YLPK+  G W+G M++TEP  G+DL  +R
Sbjct: 119 SANLSLMMYPGLTQGAIAAVLVHGTQEQKETYLPKMVEGTWSGTMNLTEPHCGTDLGLLR 178

Query: 180 TRAVPQEDGSYAISGSKIFITGGDHDLTENVIHLVLAKL---PE-SKGISLFLVPKITVN 235
           T+AVPQ DGSY ISG KIFI+ G+H +T+N++HLV+A++   PE +KGISLF+VPK  V 
Sbjct: 179 TKAVPQGDGSYKISGQKIFISAGEHSMTDNIVHLVIARIEGAPEGTKGISLFIVPKFLVK 238

Query: 236 KDGCLGGTNGVSVGSIEHKMGLKGSATCVMNFDEAKGYLIGEPNRGLVCMFTMMNYERLA 295
           +DG LG  NGV+ G+IEHKMG+ G+ATCVMN+D+A GYL+G  N+GL  MF MMN  RL 
Sbjct: 239 EDGTLGERNGVTCGAIEHKMGIHGNATCVMNYDDATGYLLGAENKGLSAMFVMMNEARLG 298

Query: 296 IGIQGLGSAQAAYQMATDYAKERSQGVAAGGSP-TGSDSDPIIVHGDVRRMLLTIRAMTE 354
           +G+QGL   + AYQ A +YA++R QG +  G+      +DPIIVH D+RR L+TI+A  E
Sbjct: 299 VGLQGLSVGEIAYQNAVEYARDRIQGRSLSGAKFPDKKADPIIVHPDIRRTLMTIKAYNE 358

Query: 355 AGRALSVFTGKQLDLAKYAQDDVKAKAA-RYVGLLTPVAKAFLTDRGLDATIMAQQVFGG 413
           AGRA  ++T  Q D+A  A D+ + +AA   +GL+TP+ K  LTD+G D  +MAQQVFGG
Sbjct: 359 AGRAFLLWTALQSDIAHRAADEKQRQAADDLLGLVTPILKGVLTDKGFDHAVMAQQVFGG 418

Query: 414 HGYIRETGVEQLVRDTRIAQIYEGTNGIQAIDFLGRKVTGDN-----LATLKE---FVAE 465
           HGYI E G+ Q VRD RI  IYEG NGIQA+D +GRK+ G N     +A  KE   F  E
Sbjct: 419 HGYIEEHGMSQYVRDARITMIYEGANGIQALDLVGRKL-GMNGGRAVMALFKEIGDFCEE 477

Query: 466 LKAQMREFTQVDGVKIAAVCARLDALVNVAESVNEQKLTQPALINACAVDFLDAFGYSVY 525
            +A  +      G+K       L+ L        +  + +P    A + D++  FG  V 
Sbjct: 478 NRADEKLSLYTKGLK-----KGLNDLQAATMWFMQNAMAKPDNAGAGSTDYMHLFGIVVL 532

Query: 526 GFYWLAMLDKVP-------SAEDQNFAEQKAYLAKFYFDKLLPKADYHLAQVRAGDVSTM 578
           G Y  A++ K         S  D++F + K   AKFY ++++P+     A++  G  + M
Sbjct: 533 G-YMQALMAKAASEALAAGSTSDEDFLKTKLVTAKFYMERIMPETALRKARIETGADTMM 591

Query: 579 AMPAELF 585
            + AE F
Sbjct: 592 ELAAEAF 598