Pairwise Alignments

Query, 414 a.a., multidrug resistance protein D (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 402 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  128 bits (322), Expect = 3e-34
 Identities = 112/410 (27%), Positives = 188/410 (45%), Gaps = 38/410 (9%)

Query: 18  SAGSATRLLFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLFQF 77
           S    +R   +L  +   G  A  +++PALP I   L  D   +QA +  + +A G  Q 
Sbjct: 4   SNAQVSRYAIVLGLLTTIGPFAIDMYLPALPAIGHALGADPHAMQASLMAFFIAVGAGQL 63

Query: 78  IYGPLSDRYGRKLPLLIGIGIFIIGALLATQATSFNQLICASLLQGLGTASAGALCRSIP 137
           + GPLSD +GR+ P++ G+ +F++ ++    A     LI    LQGLG  +     R++ 
Sbjct: 64  VAGPLSDMFGRRRPMVAGLVLFMLASIGCALAPDVGVLIALRFLQGLGACACMVTPRAVV 123

Query: 138 RDHYFGDNLLKFNSYVSMAVVFLPLVAPFLGSLASAYFGWQAVYWVLFGFGVFVWLLLCF 197
           RD Y G    +  S + M     P++AP +GS  +   GW+AV+ V+   G+    +L  
Sbjct: 124 RDLYTGPEAARMMSLLLMVYSVSPILAPLVGSFVAESVGWRAVFGVVAALGLAGLAMLMA 183

Query: 198 GFKESLPKDKR---EQQPVLASYRHVLRHRSFRAYLFSLIATFAGIAAFEAIAGVLYGQY 254
              E+ P   R     +  +A Y  +LR R F A  F  +A+F   A F  +A       
Sbjct: 184 FLPETRPAAARLSSNFRSAMAGYGLLLRDRRFMALAF--MASFTVSAFFVYVAN------ 235

Query: 255 LQLTPFMVSCYF-VAPIPGYLLGALIAG---RQKQAQ---------RSVFQGVALLGAGA 301
              +PF++S ++ V+P    LL AL A       QA          R V +   ++ AG+
Sbjct: 236 ---SPFVMSAHYGVSPRQYALLFALNAVSLLALSQANGWLVTRFGIRRVLRTAVMVQAGS 292

Query: 302 LFML----IPGLFQLVVGWSLLVGSILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGG 357
           + +L    + G+ +L V   ++V  ++ +   G++ P     A+E     AG A AL+G 
Sbjct: 293 IGLLLVLTLAGIDRLAV---MVVLLMIGYGVNGLIVPATFVLAMEGHASLAGTASALIGT 349

Query: 358 LQNFGAGLAALTMSLV-PMGGQLSIGLLSAVMVLLVIVALHYARDQNDTH 406
           + NF  G  AL ++LV P      + +++ +     +V +   R     H
Sbjct: 350 M-NFAGG--ALMVALVAPFANGKPLPMVAGIAACAAVVFVLAMRSPGVRH 396