Pairwise Alignments

Query, 428 a.a., seryl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 426 a.a., Serine--tRNA ligase from Pseudomonas putida KT2440

 Score =  537 bits (1384), Expect = e-157
 Identities = 271/428 (63%), Positives = 331/428 (77%), Gaps = 4/428 (0%)

Query: 1   MLDPKFLRNELAVTAERLATRGFILDVAHLTQLEEKRKSLQVATEELQASRNAISKSIGQ 60
           MLD K LR +L   A+RLA+RGF LDVA +  LEE+RK++Q  TE+LQA RNA SKSIGQ
Sbjct: 1   MLDSKLLRGQLQEVADRLASRGFSLDVARIESLEERRKAVQTRTEQLQAERNARSKSIGQ 60

Query: 61  AKARGEDVDAIMAQVGDLGAQLDAKKVELAAVLEEVNAIAMSMPNLPDESAPIGADETEN 120
           AKA+GED+  +MA V  +  +L A K EL A+  E++ I +++PNLPD S P+GA E +N
Sbjct: 61  AKAKGEDIAPLMADVERMANELAAGKAELDAIQAELDGILLTIPNLPDASVPVGASEDDN 120

Query: 121 VEVRRWGSPRSFDFPIKDHIDLGEGLNGLDFKSAVKITGSRFIVMKGQIARLNRALGQFM 180
           VEVRRWG+P++FDF IKDH+ LGE   GLDF++A K++G+RF V++G +ARL+RAL QFM
Sbjct: 121 VEVRRWGTPKAFDFEIKDHVALGEISGGLDFEAAAKLSGARFAVLRGPVARLHRALAQFM 180

Query: 181 LDLHTTEHGYTEAYVPLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQG-LSLIPTAEVP 239
           ++LHT EHGY E Y P +V   +L GTGQLPKF EDLF     T EG+    LIPTAEV 
Sbjct: 181 INLHTGEHGYEEHYTPYMVQAPALQGTGQLPKFEEDLFKI---TREGEADFYLIPTAEVS 237

Query: 240 LTNLVRDSIVDEDELPIKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQLVKPEDS 299
           LTNLV   I+D  +LP+KL AHT CFRSEAG+ G+DTRG+IRQHQFDKVE+VQ+V+P  S
Sbjct: 238 LTNLVAGEILDAKQLPLKLVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMVQVVEPSKS 297

Query: 300 MAALEVLTGHAETVLQRLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPGQNTYREISSCSN 359
           M ALE LT +AE VLQ L LPYR + LCTGDMGFG+ KTYD+EVW+P Q+ YREISSCSN
Sbjct: 298 MEALEGLTANAERVLQLLELPYRVLALCTGDMGFGAVKTYDLEVWVPSQDKYREISSCSN 357

Query: 360 MKDFQARRMQARYRVKADNKPVLLHTLNGSGLAVGRTLVAILENYQNADGSVTVPEALRP 419
             DFQARRMQAR+R     KP L+HTLNGSGLAVGRTLVA+LENYQ ADGS+ VPE L+P
Sbjct: 358 CGDFQARRMQARWRNPETGKPELVHTLNGSGLAVGRTLVAVLENYQQADGSILVPEVLKP 417

Query: 420 YMGGLTQI 427
           YMGG+  I
Sbjct: 418 YMGGVEVI 425