Pairwise Alignments

Query, 400 a.a., ISSod4, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 401 a.a., IS256 family transposase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  350 bits (897), Expect = e-101
 Identities = 169/390 (43%), Positives = 248/390 (63%), Gaps = 11/390 (2%)

Query: 11  LKDLQSGKSLTGKDSILGPLIKQLTEAALQAELEQHLA---HDPQA----NRKNGKTPKT 63
           LK  +  K  +   S +  L  + TE  L+ EL+ HL    H P+     N +NGKT K 
Sbjct: 13  LKQFKDSKDFS---SFMEELYVRGTEKMLEGELDHHLGYGKHSPEGRNSGNSRNGKTSKK 69

Query: 64  IKHPSGNFELDAPRDRNGTFEPQLIKKNQTTLTDEIERKVLSMFSIGMSYRDINQHVEDM 123
           +K   G  E++ PRDR GTFEP L+ K +  L + IE  V+S+++ GMS RDI + + ++
Sbjct: 70  LKSKYGEVEIEVPRDRAGTFEPVLVPKRRG-LAEGIEELVISLYAKGMSTRDIEEQLREI 128

Query: 124 YGLNVSNATVSAITDKLIPELKAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVYTLL 183
           YG N+S +TVS IT ++  ++  WQQRPL+  Y IVW+D I +KV+  G+ +SK VY  +
Sbjct: 129 YGFNLSESTVSTITHRVSEDIAEWQQRPLERLYCIVWMDGIAFKVRHSGKVISKTVYLAV 188

Query: 184 ALNMKGKKEILGLHLSENEGANYWLSVLTDLNNRGVKDILIACVDGLTGFPEAIASIFPH 243
            LN +G+KE+LG+ LSE+E A +W+ VLTD+  RGV+DILI C D L+GF + I S+FP 
Sbjct: 189 GLNSEGRKELLGMWLSESESAAFWVGVLTDIRARGVEDILITCTDNLSGFTQGIRSVFPE 248

Query: 244 TETQLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDELEAKWGDAYPLV 303
             TQ+CV+HQIRNS +YV  +++KAF AD+K +Y A ++E A + L+  E  WG  YP  
Sbjct: 249 AATQVCVVHQIRNSCRYVVWRDKKAFAADMKAIYNAPTREVAAVELERFEQAWGSKYPYA 308

Query: 304 INSWRRKWHNLSHYFKYPEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLKLLYA 363
           + SWR  W  L+ +F +P  IR++IYTTN +E ++ + RK TK KGAFP++ S+ K ++ 
Sbjct: 309 VKSWRANWEELTVFFDFPLEIRRIIYTTNLIENLNGKIRKYTKGKGAFPDDGSVRKAVFL 368

Query: 364 GILNASDKWTMPIHNWSLCLSQLAIYFEGR 393
            +   + KWT P  NW L ++Q    +  R
Sbjct: 369 ALREITKKWTQPQRNWGLIMNQFVTLYPER 398