Pairwise Alignments

Query, 452 a.a., transcriptional regulator, GntR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 474 a.a., GntR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  203 bits (516), Expect = 1e-56
 Identities = 143/438 (32%), Positives = 213/438 (48%), Gaps = 29/438 (6%)

Query: 14  GPKYQRLVSAIEQGILQKELPHGTKLPPQRRLADALGVTIGTVTRAYALAEQRGYVEARI 73
           G KY+RL   +E+GIL+  +  G KLPP R L+D LGVTIGT++RAY   E+ G V AR+
Sbjct: 22  GVKYKRLSDVMERGILEGLIEPGRKLPPHRVLSDNLGVTIGTISRAYGELERLGLVVARV 81

Query: 74  GDGTYVNASPVP-----------EMANLQLNMATCQQPLTDQISTLSDCLSLLAKDPTKL 122
           GDGT+V    +            E      +M+        +   L+     L+ +   L
Sbjct: 82  GDGTFVRKRGMERQRDEGFRNFSEEPRQYFDMSRNMHIPGQETVFLAQSFQTLSTNTKFL 141

Query: 123 SQLLGYRANP-LDQHQQTFHHWLKQRGIEQQSEQLIFTHGGQQAIFACLNAFLTKGDVLL 181
             +  Y  +  L ++++    WL QR      EQ+I  +GGQ  +   + A L  GD ++
Sbjct: 142 QDISAYTPDAGLPRYREAGAQWLVQRDFHPIPEQVICVNGGQHGLLCSMMALLRAGDTVV 201

Query: 182 HEQYCYPGIRICAKQLGINSIGVPLTSEGVDLVRFEALVQIHRPKLIYLTLNNQNPTCIQ 241
            EQ  YPG+   A+ LGI  IG+ +  EGV     + + + HR   +Y T   QNPT   
Sbjct: 202 TEQLTYPGLITAARMLGIRLIGLEMDEEGVLPSALDEVCRNHRVSALYCTPTIQNPTTAV 261

Query: 242 YSEQQRQQLLELAQQYQFYIIEDDVNYCLPEEWHSPLWQLAQVLNIQRVIYISSLSKLFS 301
            S  +RQ L+++ +++   I+ED+ +  L E+   PL   A     +R I ISSLSK  S
Sbjct: 262 LSVARRQALVKVCREHNLLILEDEAHGVLVEDRPPPLSHFAP----ERTILISSLSKAVS 317

Query: 302 GGLRQGFILVPEPLIAALRLAIHSQCWMVSPLNVELACQLIKRGHITAN---RDAIIRER 358
            GLR G++  P  L++ +  A+ S CWM +P+ +ELA Q I+ G  TA    R  I    
Sbjct: 318 AGLRVGYVHAPPALVSRISAALRSTCWMATPVTLELATQWIENG--TAEYLLRQQINEIS 375

Query: 359 QQQCIALGQRLGLTQRWRGLNG---WIQLPEDIKAHHLVTALAAKGVLIRHGDDF----N 411
           +++ +      GL  R   LN    WI++PE  +A  +   L     LI   + F     
Sbjct: 376 RRKALVRDLLTGLEYRTH-LNSPHFWIEVPEPWRASEIEAELKQNNYLIATAEAFAVGQT 434

Query: 412 CHDNFIRLSLGGAENDTQ 429
               FIR S+     D Q
Sbjct: 435 AVPQFIRASICNTSGDDQ 452