Pairwise Alignments

Query, 452 a.a., transcriptional regulator, GntR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 493 a.a., GntR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  121 bits (303), Expect = 6e-32
 Identities = 120/476 (25%), Positives = 197/476 (41%), Gaps = 54/476 (11%)

Query: 17  YQRLVSAIEQGILQKELPHGTKLPPQRRLADALGVTIGTVTRAYALAEQRGYVEARIGDG 76
           Y+++   +   I++  L  GT LP  R +A  L V   TV  AY  A  +G++ +    G
Sbjct: 22  YRKIAEGLVAAIVEGRLAPGTLLPGTREMAQLLDVNRKTVILAYEEALTKGWLVSEPRRG 81

Query: 77  TYVNAS----PVPEMANLQLNMATCQQPLTD------QISTLSDCLSLL-----AKDPTK 121
           T+VNA      +P  A          Q          Q++ L+     L       D   
Sbjct: 82  TFVNAQLTSKQLPSRAQASFAPPILAQTTAAYFTQNAQVTALNHRHDALFFDNGTSDHRL 141

Query: 122 LSQLLGYR-----------ANPLDQHQQTFHHWLK---------QRGIEQQSEQLIFTHG 161
           L Q + +R           +N L    +   + L+          RG+   +E +  T G
Sbjct: 142 LPQAVLHRYYRNALRNSFASNTLRYGSEGTGYHLRCALAEMLRNNRGLTVSAENICLTQG 201

Query: 162 GQQAIFACLNAFLTKGDVLLHEQYCYPGIRICAKQLGINSIGVPLTSEGVDLVRFEALVQ 221
            Q +++   +  L  GDV+L E+  YP      ++LG   + V +  EG    + + L +
Sbjct: 202 TQMSLYLTASLLLRPGDVVLVERLSYPPAWEIFRKLGAQLVTVDIDEEGCRTDQIDRLCR 261

Query: 222 IHRPKLIYLTLNNQNPTCIQYSEQQRQQLLELAQQYQFYIIEDDVNYCLPEEWH---SPL 278
            H+ ++IYLT ++Q PT +     +RQQLL LA  + F IIE+D ++    E+H    P 
Sbjct: 262 EHQVRMIYLTPHHQFPTTVSLHVARRQQLLALAALHDFCIIEEDYDH----EYHFNGRPY 317

Query: 279 WQLAQVLNIQRVIYISSLSKLFSGGLRQGFILVPEPLIAALRLAIHSQCWMVSPLNVELA 338
             LA     + VIYI SLSK      R  +++ P  ++ AL             +   + 
Sbjct: 318 LPLASDRAQRHVIYIGSLSKALGSTFRCSYVVAPAQVVDALHSNAALMLGDADAVAQTML 377

Query: 339 CQLIKRGHITANRDAII------RERQQQCI--ALGQRLGLTQRWRGLNGWIQLPEDIKA 390
             LI  G +  +   +       RE  Q C+  A G+R+ + +   GL  W++    I  
Sbjct: 378 ADLINDGELKKHLRRVSKEYRARRETLQTCLHEAFGERISVREPEGGLALWVRFDAQINV 437

Query: 391 HHLVTALAAKGVLIRHGDDFNCHD---NFIRLSLGGAENDTQFRLAIECIESTFNA 443
             +V +    G+++R G  F+  D   N +RL      N  + R A   +    NA
Sbjct: 438 DRMVASALDHGLVVRSGRQFSPMDQAENALRLGFASL-NQEEIREATLRLAKAANA 492