Pairwise Alignments

Query, 452 a.a., transcriptional regulator, GntR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 474 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

 Score =  168 bits (426), Expect = 3e-46
 Identities = 123/428 (28%), Positives = 196/428 (45%), Gaps = 30/428 (7%)

Query: 3   TIWIPDLDVFVGPKYQRLVSAIEQGILQKELPHGTKLPPQRRLADALGVTIGTVTRAYAL 62
           ++W+P       P Y  +  A+EQ I    L  G +LP  + LA+AL VT GTV RAY  
Sbjct: 14  SMWVPQYSHQTQPVYLMIADALEQDIESGRLAEGDRLPTLKDLAEALNVTPGTVGRAYDE 73

Query: 63  AEQRGYVEARIGDGTYVNA--SPVPEMA--------NLQLNMATCQQPLTDQISTLSDCL 112
           A +RG V   +G GT+V     P+P  +        + Q++++  +         L   +
Sbjct: 74  AAKRGLVAGEVGRGTFVRQLRQPLPAPSVPTPVAGESSQIDLSIIKPNDAHMSEWLGTAI 133

Query: 113 SLLAKDPTKLSQLLGY-RANPLDQHQQTFHHWLKQRGIEQQSEQLIFTHGGQQAIFACLN 171
           S LA   + L Q+L Y        H+Q    W+++   + + +Q++ T G Q  +   ++
Sbjct: 134 SELAAS-SDLGQVLDYVTEGGHTSHKQAGATWIQRWLPDARWQQVVLTAGAQHGLLVAIS 192

Query: 172 AFLTKGDVLLHEQYCYPGIRICAKQLGINSIGVPLTSEGVDLVRFEALVQIHRPKLIYLT 231
           +     DV+L E  CYPGI   A  LG    GV +   G+      A    HRP L+   
Sbjct: 193 SLSKSDDVVLCESLCYPGIISLAHSLGRRLRGVAMDEHGLIPEALRAACLEHRPSLLVCV 252

Query: 232 LNNQNPTCIQYSEQQRQQLLELAQQYQFYIIEDDV-NYCLPEEWHSPLWQLAQVLNIQRV 290
             +QNPT       +RQ + E+A+++  +I++DD+  +  P   + PL   A     +R 
Sbjct: 253 TTHQNPTNSIMPPARRQAIAEIAREFDLFIVDDDIYGFLEPSPDYKPLAAYAP----ERS 308

Query: 291 IYISSLSKLFSGGLRQGFILVPEPLIAALRLAIHSQCWMVSPLNVELACQLIKRGHITAN 350
           +Y++SLSK     LR G++  P   ++ L   + S  WM SPL  +LA  LI  G     
Sbjct: 309 VYLTSLSKSVLPALRIGYLYAPPQTLSRLSSMVRSSVWMPSPLMAQLASNLINSG----K 364

Query: 351 RDAIIRERQQQCIA--------LGQRLGLTQRWRGLNGWIQLPEDIKAHHLVTALAAKGV 402
            D ++R +QQ+  A        LGQ   +  +    + W++LPE   +          GV
Sbjct: 365 ADQLVRMQQQEAAARQHMAREILGQ-YKIRSQPHSFHIWLELPEPWTSDEFANLARDNGV 423

Query: 403 LIRHGDDF 410
            +  G  F
Sbjct: 424 TVVSGSQF 431