Pairwise Alignments

Query, 410 a.a., lipoprotein releasing system transmembrane protein LolE (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 400 a.a., lipoprotein-releasing ABC transporter permease subunit LolC from Serratia liquefaciens MT49

 Score =  288 bits (736), Expect = 3e-82
 Identities = 171/405 (42%), Positives = 244/405 (60%), Gaps = 12/405 (2%)

Query: 7   LYVGYRYWRARKANAFASFITLFAVSGIFLGVAALIVVSSVMNGLEGQLKQRILGAVPQL 66
           L++G RY R R ++ F  F++  +  GI LGV AL+ V SVMNG E  L+  ILG +PQ 
Sbjct: 7   LFIGLRYMRGRASDRFGRFVSWLSTIGITLGVMALVTVLSVMNGFEKDLENNILGLMPQA 66

Query: 67  TVYT-KAPLSDWTIAAEKLTMLPGVQGVTPSVSTQAMVQSAANIRAVQVFGVFPELAEKL 125
            + + +  ++   I A  +  L GV  V P  +   ++QSA ++    + GV P+ A+ L
Sbjct: 67  LITSPQGSINPQQIPASAVQSLQGVSRVAPLTTGDVVLQSARSVAVGVMLGVNPDEADPL 126

Query: 126 SAVAQHTYSGAFSELTSGQYQVILGSELARQLKVSPGDTVRLLSGDGVVYSPLGPVPSQR 185
           +    +        L  GQY +I+G +LA QL V  GD +R++      ++P+G +P QR
Sbjct: 127 TPFLVNVKQQL---LQPGQYNIIIGEQLAGQLGVKRGDPLRVMVPSASQFTPMGRIPIQR 183

Query: 186 KFLVSAVFEMGSQVDAGVAYVHYQDAKRLMRQPSDEINQLRLYLNDPFTAPALAKDVQQI 245
            F V   F   S+VD     V+ QDA RL+R P+  I   RL+L  P T   L+   QQ 
Sbjct: 184 LFTVVGTFHANSEVDGTQMLVNQQDASRLLRYPAGNITGWRLFLQQPLTVDTLS---QQK 240

Query: 246 LTAQGIEATTSDWRDTYGHLFSAVKMEKNMMSLMLSLIVAVAAFNIVSALVMMVVDKTTD 305
           L  QG E    DWR+  G LF AV+MEKNMM L+LSLIVAVAAFNI+++L ++V++K  +
Sbjct: 241 LP-QGTE--WKDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLLVMEKQGE 297

Query: 306 VAVLKTQGLRTSAVMGIFVVQGLLNAVLGLALGLVVGILITLNLNGLMATLGISILGAGQ 365
           VA+L+TQGL    +M +F+VQG    ++G  LG ++G+L+  NLN LM  LG  I GA  
Sbjct: 298 VAILQTQGLTRRQIMSVFMVQGASAGIIGSLLGTLLGVLLASNLNNLMPILGALIDGAS- 356

Query: 366 MLPVKLALGQLSLIIVGTLVVTLVATLYPALRAARVQPATALRYE 410
            LPV +A  Q+++I V  + V+L++TLYP+ RAA VQPA ALRYE
Sbjct: 357 -LPVAVAPLQVTIIAVAAMAVSLLSTLYPSWRAAAVQPAEALRYE 400