Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 1262 bits (3266), Expect = 0.0
 Identities = 643/1144 (56%), Positives = 841/1144 (73%), Gaps = 7/1144 (0%)

Query: 10   PVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTA 69
            P++      Q    + G   ++ +A      +  TL++T+D+ +A  LE EL++      
Sbjct: 7    PLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPD-- 64

Query: 70   IKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLS 129
            + V  FPD ETLPYD FSPHQD+ISQR+ +L ++    H V++VP+TT + RL P  +L 
Sbjct: 65   LPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLL 124

Query: 130  SNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIEL 189
             +  VL  G K  +  +R +L  +GY  V+ VYEHGEFA+RG+++D+FP G  +P RI+L
Sbjct: 125  GSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDL 184

Query: 190  FDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPES 249
            FDDE+ET+R FDPE QRS   V++V+LLPA+EFP    A+  F+ R+R RF+V  +    
Sbjct: 185  FDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCP- 243

Query: 250  VYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYE 309
            ++Q +S  + PAGIE YLPLFFDE STLFDYLP++TQ+ +L  IE++A     +V  RYE
Sbjct: 244  IFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYE 303

Query: 310  DRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSAN 369
            +RRVDP RPLL P EL+L +E+ FA  K  PR      + +T     +  A  LP+++  
Sbjct: 304  ERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDLAIQ 363

Query: 370  HKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDAR 428
             K  QPL AL ++    P R+LF+AES GRRE LLELL +++L+P     + +F++S  R
Sbjct: 364  AKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKSKER 423

Query: 429  LGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELK 488
            L + ++PL  G LL      A+++I E+ LFGQR+ Q+RRREK+   +ND +IKNL EL+
Sbjct: 424  LAITIAPLDEGLLLD---DPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR 480

Query: 489  VGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADG 548
             G P+VH++HGV  Y GL TL+     AE+L +EY+ G KLYVPV+NLHLI+RY+   D 
Sbjct: 481  EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA 540

Query: 549  ETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFP 608
               L++LG++TW KAK KA E++RDVAAELLD+YARR AR G +      +YA F+ GF 
Sbjct: 541  LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA 600

Query: 609  FEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPT 668
            FEET DQ++ I AV ADM +P  MDRLVCGDVGFGKTEVAMRAAF+AV+ GKQV +LVPT
Sbjct: 601  FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT 660

Query: 669  TLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEA 728
            TLLAQQHY +F+DRFADWPV +EVMSRF++AKE    +  L EGK+DIVIGTHKLL  + 
Sbjct: 661  TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV 720

Query: 729  KFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 788
            K +NLGL+IIDEEHRFGVRQKE++KALR+ VDILTLTATPIPRTLNMA+SGMRDLSIIAT
Sbjct: 721  KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT 780

Query: 789  PPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARV 848
            PPA+RL+V+TFV E + +TV+EA+LRE+LRGGQVYYLHN+V+TIEKCA D++ L+PEAR+
Sbjct: 781  PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI 840

Query: 849  VVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQ 908
             + HGQMRER+LE+VMSDFYH+RFNVL+ +TIIETGIDVPSANTIIIERAD FGLAQLHQ
Sbjct: 841  AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ 900

Query: 909  LRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGEL 968
            LRGRVGRSHHQAYAYL+TP  +++T+DA KRLEAI   +DLGAGF+LAT DLEIRGAGEL
Sbjct: 901  LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL 960

Query: 969  LGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVG 1028
            LGD QSG I  +GF+LYMEMLE AVKA+++G++P+L Q L    E+ LR+PAL+PE+Y+ 
Sbjct: 961  LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYLP 1020

Query: 1029 DVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKI 1088
            DV+ RL LYKRIAS   EE L +L+VE+IDRFGLLP+ TKNL+ +TL K QA +LG  K+
Sbjct: 1021 DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV 1080

Query: 1089 EVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLL 1148
            +   +GG IEF     +DP  +I L+Q QP  Y+ +G    KF++  E A++R   ++ L
Sbjct: 1081 DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL 1140

Query: 1149 LEQL 1152
             E+L
Sbjct: 1141 FERL 1144