Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1150 a.a., transcription-repair coupling factor from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 1254 bits (3245), Expect = 0.0
 Identities = 641/1132 (56%), Positives = 838/1132 (74%), Gaps = 8/1132 (0%)

Query: 24   IAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKVRLFPDRETLPY 83
            + G   ++ +A      +  TL++T+D+ +A  LE EL +      + V  FPD ETLPY
Sbjct: 21   LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAP--TLPVLHFPDWETLPY 78

Query: 84   DSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLSSNVFVLKKGDKYQL 143
            D FSPHQD+ISQR+ +L ++   EH V++VP+TT + RL P  +L  +  VL  G K  +
Sbjct: 79   DLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDV 138

Query: 144  HDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFDDEVETIRHFDPE 203
              +R +L  +GY  V+ VYEHGEF +RG+++D+FP G  +P RI+LFDDE+ET+R FDP+
Sbjct: 139  EAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPFRIDLFDDEIETLRTFDPD 198

Query: 204  TQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVYQLVSRNLMPAGI 263
            TQRS   V +VRLLPA+EFP     +  F+ R+R RF+V  +    ++Q +S  + PAGI
Sbjct: 199  TQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFRR-SPIFQDLSSGITPAGI 257

Query: 264  ENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYEDRRVDPLRPLLAPK 323
            E Y+PLFF+E STLFDYLP++TQ+ +L  IE++A     +V  RYE+RRVDP RPLL P 
Sbjct: 258  EYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRVDPARPLLPPA 317

Query: 324  ELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANHKLKQPLIALQDYA 383
            EL+L +E+ FA  K  PR      + D      +  A++LP++S   K  QPL AL  + 
Sbjct: 318  ELFLPVEDCFARLKNWPRVVASQQDVDAGAGRERFPAQSLPDLSIEAKATQPLAALSTFL 377

Query: 384  EQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARLGLIVSPLSRGCLL 442
            +  P R+LF+AES GRRE LLELL +++L+P     + +F+    RL + ++PL  G LL
Sbjct: 378  DDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVDGKDRLAITIAPLDEGLLL 437

Query: 443  GLGAQTAVSIICETELFGQRISQQRRREKQRQI-SNDTLIKNLAELKVGQPIVHLEHGVA 501
                Q A+++I E+ LFGQR+ Q+RRREK+    +ND +IKNL EL+ G P+VH++HGV 
Sbjct: 438  ---EQPALALIAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTELREGAPVVHIDHGVG 494

Query: 502  LYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGETHLNKLGNDTWA 561
             Y GL TL+    VAE+L L Y+   KLYVPV+NLHLI+RY+   D    L++LG++TW 
Sbjct: 495  RYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDDETAPLHRLGSETWQ 554

Query: 562  KAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHA 621
            KAK KA E++RDVAAELLD+YARR AR G +      +YA F+ GFPFEET DQ++ I A
Sbjct: 555  KAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFPFEETPDQQTTIDA 614

Query: 622  VLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKD 681
            V ADM +P  MDRLVCGDVGFGKTEVAMRAAF+AV+ G+QV +LVPTTLLAQQHY +F+D
Sbjct: 615  VRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRD 674

Query: 682  RFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEE 741
            RFADWPV +EVMSRF++AKE +  +  L EGK+DIVIGTHKLLQ + K +NLGL+IIDEE
Sbjct: 675  RFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEE 734

Query: 742  HRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVR 801
            HRFGVRQKE++KALR+ VDILTLTATPIPRTLNMA+SGMRDLSIIATPPA+RL+V+TFV 
Sbjct: 735  HRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVM 794

Query: 802  ESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLE 861
            E +  T++EA+LRE+LRGGQVYYLHN+V+TIEKCA D++ L+PEAR+ + HGQMRER+LE
Sbjct: 795  EQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELE 854

Query: 862  RVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAY 921
            +VMSDFYH+RFNVL+ +TIIETGIDVPSANTIIIERAD FGLAQLHQLRGRVGRSHHQAY
Sbjct: 855  QVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 914

Query: 922  AYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIG 981
            AYL+TP  K++T DA KRLEAI   +DLGAGF+LAT DLEIRGAGELLGD QSG I  +G
Sbjct: 915  AYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVG 974

Query: 982  FSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRLSLYKRIA 1041
            F+LYMEMLE AVK++++G++P+L Q L    E+ LR+PAL+PE Y+ DV+ RL LYKRIA
Sbjct: 975  FTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYLPDVHTRLILYKRIA 1034

Query: 1042 SCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIEVHAKGGSIEFSQ 1101
            +   EEAL +L+VE+IDRFGLLP+ TKNL+ +TL K  A +LG  KI+   +GG IEF+ 
Sbjct: 1035 NAADEEALKDLQVEMIDRFGLLPEPTKNLVRITLLKLHAEQLGIRKIDGGPQGGRIEFAA 1094

Query: 1102 DHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLLEQLS 1153
            +  +DP  +I L+QSQP  Y+ +G    KF++  E  ++R   ++ LLE+L+
Sbjct: 1095 ETPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIEALLERLT 1146