Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 635/1151 (55%), Positives = 837/1151 (72%), Gaps = 7/1151 (0%)

Query: 4    ISALTPPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNY 63
            +S L  P +      QT   + G   ++ +A         TL++T+D+  A  LE EL +
Sbjct: 1    MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF 60

Query: 64   LLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLP 123
                  + V  FPD ETLPYD FSPHQD+ISQR+ +L ++    H +++VP+TT + RL 
Sbjct: 61   FAPD--LPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLA 118

Query: 124  PKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNM 183
            P  +L  +  VL  G    +  +R +L  +GY  V+ VYEHGEFA+RG+++D+FP G  +
Sbjct: 119  PTRFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKL 178

Query: 184  PLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVI 243
            P RI+LFD+E+ET+R FDPETQRS   V++VRLLPA+EFP     +  F+ R+R RF+V 
Sbjct: 179  PYRIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVD 238

Query: 244  VKEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQE 303
             +   +++Q ++  ++PAGIE YLPLFF+E STLFDYLP +TQ+ +L  +E++A     +
Sbjct: 239  FRR-SAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWND 297

Query: 304  VEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARAL 363
            V  RYEDRR D  RPLL P EL+L +E+ FA  K  PR    +   +      +  ARAL
Sbjct: 298  VRGRYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARAL 357

Query: 364  PEVSANHKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEF 422
            P ++   K  QPL  L ++ +Q P R+LF+AES GRRE LLELL +++L+P     +D+F
Sbjct: 358  PNLAIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDF 417

Query: 423  IQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIK 482
            I    RL + ++PL  G LL       +++I E+ LFGQR+ Q+RRR+K+ + +ND +IK
Sbjct: 418  ITGAERLAITIAPLDDGLLLD---DPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIK 474

Query: 483  NLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRY 542
            NL EL+ G P+VH++HGV  Y GL TL+  G  AE+L LEY+   KLYVPV+NLHLI+RY
Sbjct: 475  NLTELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARY 534

Query: 543  SVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQ 602
            +   D    L++LG++ W KAK KA E++RDVAAELLD+YARR AR G +      +YA 
Sbjct: 535  TGSDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYAT 594

Query: 603  FAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV 662
            F+ GFPFEET DQ++AI AV ADM +P  MDRLVCGDVGFGKTEVAMRAAF+AV+ G+QV
Sbjct: 595  FSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQV 654

Query: 663  VVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHK 722
             VLVPTTLLAQQHY +F+DRFADWPV +EVMSRF++AKE       L EGK+DI+IGTHK
Sbjct: 655  AVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHK 714

Query: 723  LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRD 782
            LLQ + +F++LGL IIDEEHRFGVRQKE++KALR+ VDILTLTATPIPRTLNMA++GMRD
Sbjct: 715  LLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRD 774

Query: 783  LSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTL 842
            LSIIATPPA+RL+V+TFV E + +TV+EA+LRE+LRGGQVYYLHN+V+TIEKCA D++ L
Sbjct: 775  LSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAEL 834

Query: 843  LPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFG 902
            +PEAR+ + HGQMRER+LE+VMSDFYH+RFNVLV +TIIETGIDVPSANTI+IERAD FG
Sbjct: 835  VPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFG 894

Query: 903  LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEI 962
            LAQLHQLRGRVGRSHHQAYAYL+TP  ++++ DA KRLEAI   +DLGAGF+LAT DLEI
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEI 954

Query: 963  RGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALL 1022
            RGAGELLG+ QSG I  +GF+LYMEMLE AVKA+++G +P+L Q L    E+ LR+PAL+
Sbjct: 955  RGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALI 1014

Query: 1023 PEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATR 1082
            PEDY+ DV+ RL LYKRIAS   EE L +L+VE+IDRFGLLP+ TKNLM +T  K  A +
Sbjct: 1015 PEDYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEK 1074

Query: 1083 LGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRL 1142
            LG  K++    GG +EF  +  +DP  +I L+Q QP+ Y+ +G  + +F++  E   +R 
Sbjct: 1075 LGIKKVDAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERF 1134

Query: 1143 ALVKLLLEQLS 1153
              ++ L E+L+
Sbjct: 1135 NTLEALFERLT 1145