Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1150 a.a., transcription-repair coupling factor from Pectobacterium carotovorum WPP14

 Score = 1289 bits (3335), Expect = 0.0
 Identities = 666/1141 (58%), Positives = 847/1141 (74%), Gaps = 12/1141 (1%)

Query: 17   QMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKVRLFP 76
            + + L  + G   AV  A +I +H G  +++  D   AL L  E+      T   V   P
Sbjct: 16   EQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQQF---TDQHVTTLP 72

Query: 77   DRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLSSNVFVLK 136
            D ETLPYDSFSPHQ++IS RL TL Q+ +    V+I+PV TLM R+ P S+L  +  VLK
Sbjct: 73   DWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCPHSFLHGHALVLK 132

Query: 137  KGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFDDEVET 196
            KG +     +R QL   GY  V+QV EHGE+A RG++LD+FP G   P RI+ FDDE+++
Sbjct: 133  KGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPYRIDFFDDEIDS 192

Query: 197  IRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVYQLVSR 256
            +R FD +TQR+   V  + LLPA EFPTD +AIE FR ++R +FEV  ++ E +YQ VS+
Sbjct: 193  LRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVR-RDAEHIYQQVSK 251

Query: 257  NLMPAGIENYLPLFFDE-VSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYEDRRVDP 315
             + PAGIE + PLFF E + +LF Y P NT LV  G++E+SA    Q+++ R+E RRVDP
Sbjct: 252  GVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLLVNTGNLEQSAERFWQDIQQRFESRRVDP 311

Query: 316  LRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANHKLKQP 375
            +RPLL    L+L ++ LF   K  PR Q              +    LPE++  H+ K P
Sbjct: 312  MRPLLPSDSLWLRVDGLFTELKAWPRVQLKTDTLPEKAANVNLAYLPLPELAIQHQQKSP 371

Query: 376  LIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARLGLIVS 434
            L AL+ + EQ   +++FS ESEGRRE L ELL +I+L P++ S  ++    D    LI+ 
Sbjct: 372  LDALRRFIEQFDGQVIFSVESEGRRETLQELLARIKLNPTLISTLEQ--AQDRGTYLIIG 429

Query: 435  PLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELKVGQPIV 494
                G +  L  +   ++ICE++L G+R+S+ RR++ +R I+ DTLI+NLAEL+ GQP+V
Sbjct: 430  ASEHGFIDTLRQR---ALICESDLLGERVSR-RRQDSRRTINTDTLIRNLAELRPGQPVV 485

Query: 495  HLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGETHLNK 554
            HLEHGV  Y GL TL+ GGI AEYL L Y+G DKLYVPVS+LHLISRY+ GAD    L+K
Sbjct: 486  HLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENAPLHK 545

Query: 555  LGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPFEETVD 614
            LG D W++A+ KA E++RDVAAELLD+YA+R A+ G + + +  +Y  F + FPFE T D
Sbjct: 546  LGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPFETTPD 605

Query: 615  QESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQ 674
            Q  AI+AVL+DM  P AMDRLVCGDVGFGKTEVAMRAAF+AV + KQV VLVPTTLLAQQ
Sbjct: 606  QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQ 665

Query: 675  HYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLG 734
            H++NF+DRFA+WPV IE++SRFR+A+EQTQVL++ +EGKVDI+IGTHKLLQS+ ++ +LG
Sbjct: 666  HFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVRWRDLG 725

Query: 735  LLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRL 794
            LLI+DEEHRFGVR KE+IKA+RA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RL
Sbjct: 726  LLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 785

Query: 795  AVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQ 854
            AVKTFVRE D   VREAILREILRGGQVYYL+N+VE IEK  Q ++ L+PEAR+ + HGQ
Sbjct: 786  AVKTFVREYDNLVVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQ 845

Query: 855  MRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVG 914
            MRER+LERVM+DF+HQRFNVLVCTTIIETGID+PSANTIIIERAD FGLAQLHQLRGRVG
Sbjct: 846  MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVG 905

Query: 915  RSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQS 974
            RSHHQAYAYL+TP+PK M+TDA+KRLEAI +LEDLGAGF LAT DLEIRGAGELLGD+QS
Sbjct: 906  RSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGDDQS 965

Query: 975  GHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRL 1034
            G ++ +GFSLYME+LESAV ALK G+EPSL  ++N Q ++ELR+PALLP+D++ DVN RL
Sbjct: 966  GQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPDVNTRL 1025

Query: 1035 SLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIEVHAKG 1094
            SLYKRIAS  +   LDELKVELIDRFGLLPDA++ L+++   + QA  LG  +IE + KG
Sbjct: 1026 SLYKRIASAKTPAELDELKVELIDRFGLLPDASRYLLQVAALRQQAQALGIRRIEGNEKG 1085

Query: 1095 GSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLLEQLSQ 1154
            G IEFS+ + +DP  +IGLLQ  P  YR+DGP +LKF+        R+  +  LL  ++Q
Sbjct: 1086 GFIEFSEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLLGNMAQ 1145

Query: 1155 H 1155
            H
Sbjct: 1146 H 1146