Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1159 a.a., transcription-repair coupling factor from Magnetospirillum magneticum AMB-1

 Score =  742 bits (1915), Expect = 0.0
 Identities = 435/1110 (39%), Positives = 651/1110 (58%), Gaps = 44/1110 (3%)

Query: 70   IKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHS--VVIVPVTTLMMRLPPKSY 127
            ++V  FP  + +PYD  SPH D++++R++TL+++        VV+  V  L  R+PP+  
Sbjct: 65   LQVLEFPGWDCVPYDRVSPHVDMVARRIDTLARLADGVKGAFVVLTTVPGLAQRVPPREA 124

Query: 128  LSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRI 187
            L+S     +KG +  +  +   L+  GY   + V E GE+A+RG I+D++P G   PLR+
Sbjct: 125  LASATLDARKGSRLSMDKLIGFLSKNGYVRADTVMEPGEYAVRGGIVDLYPPGSAEPLRL 184

Query: 188  ELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEP 247
            + F DE++++R FDP +QR++ P+      P  E   D ++I  FR  YR  F VI   P
Sbjct: 185  DFFGDEIDSVRSFDPMSQRTTGPMAGFVCRPVSEVGLDDASIARFRTNYREMFGVI-SGP 243

Query: 248  ESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIR 307
            + +Y+ +S  +   G+E++LPLF D + TLF Y+P+   ++     E     H   +E  
Sbjct: 244  DPLYEAISEGIKFNGMEHWLPLFHDGLDTLFAYVPEAAVVLDHQSDEALTARHALVLE-- 301

Query: 308  YEDRRVD-----------PLRPLLAPKELYLLIEE---LFAAFKPLPRYQFVAPNPDTNG 353
            Y D R                P+L P+ LYL   E   L AA   L    F A   D   
Sbjct: 302  YFDARAGLAGAGLTESGMVYHPIL-PERLYLERAEWDRLLAARPVLHLSPFDAVEGDEGA 360

Query: 354  VAAQ-------IDARALPEVSANHKLKQPLIALQDYAEQAPRMLFSAESEGRREALLELL 406
            V A         D RA P V+    +++     ++ A+   R++ +A ++G R+ L  +L
Sbjct: 361  VDAGGRLGRDFADMRARPGVNVYDCVREHA---EEQAKAGRRVVIAAWTQGSRDRLAGVL 417

Query: 407  GKIQLK--PSVFSHFDEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRIS 464
                +K   +V S  +       R+ + V  L  G      A   +++I E ++ G R++
Sbjct: 418  RDHGIKGIETVESWAEAQGLDKGRVAVAVLGLDHGF-----ATPDLAVITEQDILGDRLA 472

Query: 465  QQRRREKQRQISNDTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYS 524
            +  R++K+        I   + L  G  +VH+EHG+  Y GLV L+  G   + L++ Y 
Sbjct: 473  RPARKKKK----GAQFIAEASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRVLYD 528

Query: 525  GGDKLYVPVSNLHLISRYSVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYAR 584
            GGDKL+VPV N+ +++R+     G + L+KLG   W   K K  ++IRD+A +L+ + A+
Sbjct: 529  GGDKLFVPVENIDVLTRFGSEQAGVS-LDKLGGTAWQARKAKLKKRIRDIADQLIGIAAQ 587

Query: 585  RQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGK 644
            R+ R GE+    +  Y +F   FPF ET DQ  AI   +AD+ S   MDRL+CGDVGFGK
Sbjct: 588  RKMRQGEALVPAEGLYDEFCARFPFAETEDQMRAIEDSIADLASGKPMDRLICGDVGFGK 647

Query: 645  TEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQ 704
            TEVAMR AFVA   G QV V+VPTTLLA+QHY  FK+RF+  PV +E +SR  TAK  ++
Sbjct: 648  TEVAMRVAFVAALQGLQVAVVVPTTLLARQHYRTFKERFSGLPVRVEQLSRLVTAKTASE 707

Query: 705  VLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTL 764
            V   + +G VD+V+GTH LL     F+ LGLLIIDEE  FGV  KE++K L+A+V +LTL
Sbjct: 708  VKAGVADGSVDVVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQLKADVHVLTL 767

Query: 765  TATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYY 824
            TATPIPRTL MA+SG++++S+IATPP  RLAV+TFV   DP  +RE+ILRE  RGGQV+Y
Sbjct: 768  TATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLPYDPVVLRESILRERYRGGQVFY 827

Query: 825  LHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETG 884
            +   +  I++ A+ ++ L+PE +  VAHG++   DLE VM  F  ++++VL+ T IIE+G
Sbjct: 828  VCPRLADIDRVAERLAKLVPEVKTAVAHGRLAPADLEEVMVAFGEKQYDVLLSTNIIESG 887

Query: 885  IDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAID 944
            ID+PS NT+II RAD FGL QL+QLRGRVGR   + YAY   P+ K ++  A KRL+ + 
Sbjct: 888  IDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAYFTLPNDKVLSKAAEKRLQVMQ 947

Query: 945  ALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSL 1004
            AL+ LGAGF LA+ DL+IRGAG LLG+EQSGHI ++G  LY ++LE AV A K G+    
Sbjct: 948  ALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGVELYQQLLEEAVAAAKGGQGGEA 1007

Query: 1005 AQMLNQQCEMELRIPALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLP 1064
            A+  + Q  + +  P L+PE YV D+++RLSLY+RI S   +  ++ L  ELIDRFG LP
Sbjct: 1008 AEEWSPQ--IAVGTPVLIPETYVADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGKLP 1065

Query: 1065 DATKNLMEMTLYKHQATRLGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMD 1124
               +NL+E+   K      G  K++   KG  +    +   +P  ++  +       ++ 
Sbjct: 1066 PEVENLLEVVAIKALCKLAGIDKVDSGPKGAVVSLRGNVFANPAALVQFIARSAGSCKIR 1125

Query: 1125 GPNKLKFILSAETAKDRLALVKLLLEQLSQ 1154
              +K+ F+ + E  K R+  ++ ++ +L++
Sbjct: 1126 PDHKIVFLRAWEDPKQRIVGLRNVIGKLAE 1155