Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1275 bits (3299), Expect = 0.0
 Identities = 659/1145 (57%), Positives = 844/1145 (73%), Gaps = 13/1145 (1%)

Query: 13   KNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKV 72
            K G Q Q L  + G   A  +A +  +H G  +++  D   AL L  E+     +  + +
Sbjct: 12   KAGDQRQ-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNL 70

Query: 73   RLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLSSNV 132
                D ETLPYDSFSPHQ++IS RL TL Q+   +  V+IVPV TLM R+ P SYL  + 
Sbjct: 71   A---DWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLHGHA 127

Query: 133  FVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFDD 192
             V+KKG +     +R QL   GY  V+QV EHGE+A RG++LD+FP G   P R++ FDD
Sbjct: 128  LVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDD 187

Query: 193  EVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVYQ 252
            E++++R FD +TQR+   V A+ LLPA EFPTD +AIE FR ++R  FEV  ++ E +YQ
Sbjct: 188  EIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV-KRDAEHIYQ 246

Query: 253  LVSRNLMPAGIENYLPLFFDE-VSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYEDR 311
             VS+  +PAGIE + PLFF E +  LF Y P NT +V  G +E SA     +   R+E+R
Sbjct: 247  QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFENR 306

Query: 312  RVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANHK 371
             VDP+RPLL P+ L+L ++ELF+  K  PR Q    +         +  + LP+++   +
Sbjct: 307  GVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQ 366

Query: 372  LKQPLIALQDYAEQ-APRMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARLG 430
             K PL AL+ + E  +  ++FS ESEGRREAL ELL +I++ P      DE    DA   
Sbjct: 367  QKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDE--AQDAGRY 424

Query: 431  LIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELKVG 490
            L++     G +     Q  +++ICE++L G+R+++ RR + +R I+ DTLI+NLAEL VG
Sbjct: 425  LMIGAAEHGFI---DTQRNLALICESDLLGERVAR-RRLDSRRTINPDTLIRNLAELHVG 480

Query: 491  QPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGET 550
            QP+VHLEHGV  Y G+ TL+ GGI  EYL L Y+   KLYVPVS+LHLISRY+ GA+   
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA 540

Query: 551  HLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPFE 610
             L+KLG D W++A+ KA EK+RDVAAELLD+YA+R A+ G + + + E+Y  F   FPFE
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 611  ETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTL 670
             T DQ  AI+AVL+DM  P AMDRLVCGDVGFGKTEVAMRAAF+AV + KQV VLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660

Query: 671  LAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKF 730
            LAQQHY+NF+DRFA+WPV IE++SRFR+AKEQTQ+L +  EGK+DI+IGTHKLLQS+ K 
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL 720

Query: 731  ENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 790
             +LGLLI+DEEHRFGVR KE+IKA+RA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 721  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 791  AKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVVV 850
            A+RLAVKTFVRE D   VREAILREILRGGQVYYL+N+VE I+K A+ ++ L+PEAR+ +
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 851  AHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLR 910
             HGQMRER+LERVM+DF+HQRFNVLVCTTIIETGID+P+ANTIIIERAD FGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 911  GRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLG 970
            GRVGRSHHQAYA+L+TPHPK MTTDA+KRLEAI +LEDLGAGF LAT DLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 971  DEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGDV 1030
            +EQSG +  IGFSLYME+LE+AV ALK G+EPSL  + +QQ E+ELR+P+LLP+D++ DV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020

Query: 1031 NIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIEV 1090
            N RLS YKRIAS  +E  L+E+KVELIDRFGLLPD  +NL+++   + QA +LG  K+E 
Sbjct: 1021 NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080

Query: 1091 HAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLLE 1150
            + KGG+IEF++ + +DP ++IGLLQ QPQ +R+DGP +LKFI      K R+  V+  ++
Sbjct: 1081 NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ 1140

Query: 1151 QLSQH 1155
            QL ++
Sbjct: 1141 QLEEN 1145