Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

 Score = 1262 bits (3266), Expect = 0.0
 Identities = 658/1146 (57%), Positives = 841/1146 (73%), Gaps = 13/1146 (1%)

Query: 12   VKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIK 71
            VK G Q Q L  + G   A  +A +  +H G  ++V  D   AL L  E+      T   
Sbjct: 11   VKAGDQRQ-LGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQF---TDSL 66

Query: 72   VRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLSSN 131
            V    D ETLPYDSFSPHQ++IS RL TL Q+   +  V+IVPV TLM R+ P SYL  +
Sbjct: 67   VFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGH 126

Query: 132  VFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFD 191
              V+KKG +     +R QL   GY  V+QV EHGE+A RG++LD++P G + P R++ FD
Sbjct: 127  ALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFD 186

Query: 192  DEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVY 251
            DE++++R FD +TQR+   V ++ LLPA EFPTD +AIE FR ++R +FEV  ++ E +Y
Sbjct: 187  DEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEV-KRDAEHIY 245

Query: 252  QLVSRNLMPAGIENYLPLFFDE-VSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYED 310
            Q VS+  +PAGIE + PLFF+E +  LF Y P NT +V  GDI+ SA     E   R+E+
Sbjct: 246  QQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFEN 305

Query: 311  RRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANH 370
            R VDP+RPLL P+ L+L  +EL A  K  PR Q    +         +  R LP+++   
Sbjct: 306  RGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQA 365

Query: 371  KLKQPLIALQDYAEQ-APRMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARL 429
            + K PL  L+ + E     ++FS ESEGRREAL ELLG+I++ P       E   +   L
Sbjct: 366  QQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATGNGRYL 425

Query: 430  GLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELKV 489
              ++     G +  L     +++ICE++L G+R+++ RR++ +R I+ DTLI+NLAEL  
Sbjct: 426  --MIGAAEHGFIDTLNN---LALICESDLLGERVAR-RRQDSRRTINPDTLIRNLAELHP 479

Query: 490  GQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGE 549
            GQPIVHLEHGV  YQG+ TL+ GGI  EYL L Y+   KLYVPVS+LHLISRY+ GA+  
Sbjct: 480  GQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539

Query: 550  THLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPF 609
              L+KLG D WA+A+ KA EK+RDVAAELLD+YA+R A+ G + + + E+Y  F   FPF
Sbjct: 540  APLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPF 599

Query: 610  EETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTT 669
            E T DQ  AI+AVL+DM  P AMDRLVCGDVGFGKTEVAMRAAF+AV + KQV VLVPTT
Sbjct: 600  ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTT 659

Query: 670  LLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAK 729
            LLAQQH++NF+DRFA+WPV IE++SRFR+ KEQTQ+L+Q  EGK+DI+IGTHKLLQS+ K
Sbjct: 660  LLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVK 719

Query: 730  FENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 789
            +++LGLLI+DEEHRFGVR KE+IKA+RA+VDILTLTATPIPRTLNMAMSGMRDLSIIATP
Sbjct: 720  WKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779

Query: 790  PAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVV 849
            PA+RLAVKTFVRE D   VREAILRE+LRGGQVYYL+N+VE I+K A  ++ L+PEAR+ 
Sbjct: 780  PARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIA 839

Query: 850  VAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQL 909
            + HGQMRER+LERVM+DF+HQRFNVLVCTTIIETGID+P+ANTIIIERAD FGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 910  RGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELL 969
            RGRVGRSHHQAYA+L+TPHPK MTTDA+KRLEAI +LEDLGAGF LAT DLEIRGAGELL
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 970  GDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGD 1029
            G++QSG +  IGFSLYME+LE+AV ALK G+EPSL  + +QQ E+ELR+P+LLP+D++ D
Sbjct: 960  GEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019

Query: 1030 VNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIE 1089
            VN RLS YKRIAS   E  L+E+KVELIDRFGLLPD  +NL+++   + QA +LG  K+E
Sbjct: 1020 VNTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLE 1079

Query: 1090 VHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLL 1149
             + KGG IEF++ + ++P ++IGLLQ QPQ +R+DGP +LKF       K R+  V+  +
Sbjct: 1080 GNEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFM 1139

Query: 1150 EQLSQH 1155
             QL ++
Sbjct: 1140 RQLEEN 1145