Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC62

 Score = 1281 bits (3316), Expect = 0.0
 Identities = 661/1146 (57%), Positives = 851/1146 (74%), Gaps = 13/1146 (1%)

Query: 12   VKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIK 71
            VK G Q + L  + G   A  +A +  +H G  +++  D   AL L  E++    +  + 
Sbjct: 27   VKAGEQ-RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 85

Query: 72   VRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLSSN 131
            +    D ETLPYDSFSPHQD+IS RL TL Q+   +  V+IVPV TLM R+ P S+L  +
Sbjct: 86   LA---DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 142

Query: 132  VFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFD 191
              V+KKG +     +R QL   GY  V+QV EHGE+A RG++LD+FP G  +P R++ FD
Sbjct: 143  ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 202

Query: 192  DEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVY 251
            DE++++R FD ++QR+   V A+ LLPA EFPTD +AIE FR ++R  FEV  ++PE +Y
Sbjct: 203  DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV-KRDPEHIY 261

Query: 252  QLVSRNLMPAGIENYLPLFFDE-VSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYED 310
            Q VS+  +PAGIE + PLFF E +  LF Y P NT LV  GD+E SA     +   R+E+
Sbjct: 262  QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN 321

Query: 311  RRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANH 370
            R VDP+RPLL P+ L+L ++ELF+  K  PR Q    +  T    A +  + LP+++   
Sbjct: 322  RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA 381

Query: 371  KLKQPLIALQDYAEQAPR-MLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARL 429
            + K PL AL+ + E     ++FS ESEGRREAL ELL +I++ P      DE   SD   
Sbjct: 382  QQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGR 439

Query: 430  GLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELKV 489
             L++     G +        +++ICE++L G+R+++ RR++ +R I+ DTLI+NLAEL +
Sbjct: 440  YLMIGAAEHGFV---DKVRNLALICESDLLGERVAR-RRQDSRRTINPDTLIRNLAELHI 495

Query: 490  GQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGE 549
            GQP+VHLEHGV  Y G+ TL+ GGI  EYL L Y+   KLYVPVS+LHLISRY+ GA+  
Sbjct: 496  GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 555

Query: 550  THLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPF 609
              L+KLG D W++A+ KA EK+RDVAAELLD+YA+R A+ G + + + E+Y  F   FPF
Sbjct: 556  APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 615

Query: 610  EETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTT 669
            E T DQ  AI+AVL+DM  P AMDRLVCGDVGFGKTEVAMRAAF+AV++ KQV VLVPTT
Sbjct: 616  ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 675

Query: 670  LLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAK 729
            LLAQQHY+NF+DRFA+WPV IE++SRFR+AKEQTQ+L ++ EGK+DI+IGTHKLLQS+ K
Sbjct: 676  LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 735

Query: 730  FENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 789
            F++LGLLI+DEEHRFGVR KE+IKA+RANVDILTLTATPIPRTLNMAMSGMRDLSIIATP
Sbjct: 736  FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 795

Query: 790  PAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVV 849
            PA+RLAVKTFVRE D   VREAILREILRGGQVYYL+N+VE I+K A+ ++ L+PEAR+ 
Sbjct: 796  PARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 855

Query: 850  VAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQL 909
            + HGQMRER+LERVM+DF+HQRFNVLVCTTIIETGID+P+ANTIIIERAD FGLAQLHQL
Sbjct: 856  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 915

Query: 910  RGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELL 969
            RGRVGRSHHQAYA+L+TPHPK MTTDA+KRLEAI +LEDLGAGF LAT DLEIRGAGELL
Sbjct: 916  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 975

Query: 970  GDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGD 1029
            G+EQSG +  IGFSLYME+LE+AV ALK G+EPSL  + +QQ E+ELR+P+LLP+D++ D
Sbjct: 976  GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1035

Query: 1030 VNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIE 1089
            VN RLS YKRIAS  +E  L+E+KVELIDRFGLLPD  + L+++   + QA +LG  K+E
Sbjct: 1036 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLE 1095

Query: 1090 VHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLL 1149
             + KGG IEF++ + ++P ++IGLLQ QPQ YR+DGP +LKFI      K R+  V+  +
Sbjct: 1096 GNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1155

Query: 1150 EQLSQH 1155
             +L ++
Sbjct: 1156 RELEEN 1161