Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1167 a.a., Transcription-repair-coupling factor from Acinetobacter radioresistens SK82

 Score = 1090 bits (2818), Expect = 0.0
 Identities = 574/1156 (49%), Positives = 789/1156 (68%), Gaps = 19/1156 (1%)

Query: 4    ISALTPPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNY 63
            IS L    +K G + + +  + G   A+ L  +  Q +   ++V  +      LE EL +
Sbjct: 20   ISQLNLKQLKAG-EKRWVGSLLGSSAALLLKEIAEQSRQLLVLVAKNNQHVAQLESELEF 78

Query: 64   LLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLP 123
                  IK  +FPD E LPYD  SPHQD++S+RL  LS +   +  ++++  +TL  R+ 
Sbjct: 79   Y----GIKPIIFPDWEILPYDRLSPHQDIVSERLAILSNMP--QQGILLLSASTLAQRVA 132

Query: 124  PKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNM 183
            P S++    F ++ G K+ L   + +L   GY LV+ VY+HGEFA+RGSI+DI+ +G   
Sbjct: 133  PTSWILGEHFDIRVGQKFDLEQQKLRLVQAGYLLVDTVYDHGEFAVRGSIMDIYASGQEA 192

Query: 184  PLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVI 243
            P+RI+LFDDE+++++ FDPETQR+++ +   ++LPAKEFP        FR RY   F   
Sbjct: 193  PIRIDLFDDEIDSLKFFDPETQRTTSNLTQFKVLPAKEFPLKDGR-STFRDRYAESFPTA 251

Query: 244  VKEPESVYQLVSRNLMPAGIENYLPLFFDEVST-----LFDYLPKNTQLVTLGDIEKSAR 298
              +   +YQ V   +   GI+ YLPLFF + S      L  YLP+++ ++T  D+++   
Sbjct: 252  NPKKNPIYQDVMEGIASPGIDFYLPLFFSKQSIQTQGMLSAYLPQHSIVITDRDLDECLI 311

Query: 299  AHLQEVEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQI 358
               ++V  RYEDRR +  +P+L P++L+L    L       PR    +   +       +
Sbjct: 312  TFWKDVNRRYEDRRHNADQPILPPEDLFLKPNALLELLNHFPRIIASSEQFEEKAGVINM 371

Query: 359  DARALPEVSANHKLKQPLIALQDYAEQAPR-MLFSAESEGRREALLELLGKIQLKPSVFS 417
                 P +  N K ++P   +++Y + A   +L   ES GRRE+L + L          +
Sbjct: 372  AVSEPPRLPVNPKHEKPFHQVKEYIDNAQHPVLLVTESAGRRESLRDALRSTLGDIPTVA 431

Query: 418  HFDEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISN 477
            +F+ F     ++ +  +PL RG ++       +++I E +L+  R+ Q RRR++Q+++S 
Sbjct: 432  NFNIFQNDQYKIAITTAPLERGLIIN----DQLTVISENQLYEHRVVQ-RRRKRQQEVSE 486

Query: 478  DTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLH 537
            + LI++L EL +G P+VH++HGV  Y GLVTL       E+LQL+Y+ G K+YVPV+NLH
Sbjct: 487  EFLIRSLTELSIGAPVVHIDHGVGRYAGLVTLSIDDQEYEFLQLDYAEGAKVYVPVTNLH 546

Query: 538  LISRYSVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEIND 597
            LISRYS G      L+K+G+D W KAK KA+E+I DVAAELL + ARR A+PG + EI+ 
Sbjct: 547  LISRYSGGDPDLAPLHKIGSDAWNKAKRKALEQIHDVAAELLHIQARRHAKPGFAFEIDQ 606

Query: 598  EEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVN 657
              Y QFA GF +EET+DQ +AI A L DMQ    MDRLVCGDVGFGKTEVAMRAAFVAV 
Sbjct: 607  SLYMQFASGFAYEETLDQANAIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQ 666

Query: 658  DGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIV 717
            + KQV VLVPTTLLAQQHYE+FKDRFADWPV IEV+SRF + K   + ++ L +GKVDIV
Sbjct: 667  NNKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADGKVDIV 726

Query: 718  IGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAM 777
            IGTHKLLQ   +F++LGL+I+DEEHRFGVR KE+IKA+RA+VD+LTLTATPIPRTLNMA 
Sbjct: 727  IGTHKLLQENVQFKDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAF 786

Query: 778  SGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQ 837
            SGMRDLSIIATPPA+RLAVKTFV+E   A+++EAILRE+LRGGQVY+LHN V++IE+ A+
Sbjct: 787  SGMRDLSIIATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVDSIERTAE 846

Query: 838  DISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIER 897
            +I  L+PEARV VAHGQMRER+LE+VM  FYH+++NVLVC+TIIETGIDVP+ANTIIIER
Sbjct: 847  NIRALVPEARVAVAHGQMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANTIIIER 906

Query: 898  ADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLAT 957
            AD  GLAQLHQLRGRVGRSHHQAYAYL+ P  K +  DA KRL+AI    +LGAGFMLAT
Sbjct: 907  ADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKALKGDAEKRLDAIQRASNLGAGFMLAT 966

Query: 958  QDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELR 1017
            +DLEIRGAGELLG++QSG +  IG+SLYMEMLE A KA++QGK P+    L+   E+ L 
Sbjct: 967  EDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLH 1026

Query: 1018 IPALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYK 1077
            +PAL+P++Y+GDV+ RL  YKRI++ D+++ LD +++EL+DRFGL P   K L  +   +
Sbjct: 1027 MPALIPDEYLGDVHQRLLFYKRISNADTQDKLDNIRMELVDRFGLAPQPVKQLFSVHQIR 1086

Query: 1078 HQATRLGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAET 1137
             +A +LG TK+++ + GGSIEFS D ++    II L+Q QP  +RM+G  +LK ++  E 
Sbjct: 1087 LKAEQLGITKVDIGSHGGSIEFSPDTAVQAISIIQLMQKQPTHFRMEGGQRLKVLVMLEE 1146

Query: 1138 AKDRLALVKLLLEQLS 1153
             + R+  +  LL+QL+
Sbjct: 1147 YEQRIEFILKLLDQLT 1162