Pairwise Alignments

Query, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  248 bits (632), Expect = 7e-70
 Identities = 162/479 (33%), Positives = 247/479 (51%), Gaps = 33/479 (6%)

Query: 85  NQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQNFTLPNGTNPLTTLLSQA------R 138
           +Q  Y G G   LI  N +++A+ + AS +G  A +    N    L  L +        +
Sbjct: 249 DQKLYNGAGEMALISSNGRLVAYTKDASKLGEKASDLLDSNELTNLNQLKAGEVRYDIDK 308

Query: 139 QNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVKESLYEVMVDY---- 194
           ++G   L  P             A+AR      WTL+    LS V     ++  D     
Sbjct: 309 EHGHIELFLPFTIGQ--------ADAR------WTLMLQLPLSAVMADSQKLQSDLEAQR 354

Query: 195 --------LIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQGK 246
                   +  + +  + +   +LV  H I  PL   +  L DIAQGEGDL++RL++   
Sbjct: 355 KTDIFGMTIAGLLIAGIGLLVIWLV-GHGIARPLKQMVAMLNDIAQGEGDLTRRLTSDRA 413

Query: 247 DEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGSVA 306
           DE+  +A+ FN F  K+  M+  +    Q + + ++        +NQ       E   VA
Sbjct: 414 DELGAIANGFNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVA 473

Query: 307 TAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAITQ 366
           TAV++M +T  ++A N  QAA AA+     A Q   ++ +T      L +E+  + ++ Q
Sbjct: 474 TAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQ 533

Query: 367 KLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRTQD 426
            L + S  I +IL  IR IAEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA +TQ 
Sbjct: 534 TLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQK 593

Query: 427 STNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMNTQ 486
           +T EIQ +I ++Q G   V++    +Q +++E    A +A +A+  I + ++ I+DMNTQ
Sbjct: 594 ATEEIQTMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAVSVINDMNTQ 653

Query: 487 LASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTLGQFKI 545
           +ASA EEQS V E+INRN+ NI ++        + +S A+  L  +++     + QFK+
Sbjct: 654 IASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFKV 712