Pairwise Alignments

Query, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 712 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25

 Score =  246 bits (629), Expect = 2e-69
 Identities = 161/479 (33%), Positives = 246/479 (51%), Gaps = 33/479 (6%)

Query: 85  NQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQNFTLPNGTNPLTTLLSQA------R 138
           +Q  Y G G   LI  N +++A+ + AS +G  + +    N    L  L +        R
Sbjct: 249 DQNLYNGAGELALISSNGRLVAYTKDASKLGEKSSDLLDTNEQANLAQLKAGEVRYDIDR 308

Query: 139 QNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVKESLYEVMVDY---- 194
           ++G   L  P              +AR      WTL+    L+ V   L+ +  D     
Sbjct: 309 EHGHIELFLPF--------NIGQTDAR------WTLMMQLPLNAVMADLHTLQSDLDAQR 354

Query: 195 --------LIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQGK 246
                   +  + +  + +   +LV  H I  PL   +  L DIAQGEGDL++RL++   
Sbjct: 355 KADIVGMAIAGLLIAGIGLLVIWLV-GHGIARPLKQMVAMLNDIAQGEGDLTRRLTSDRA 413

Query: 247 DEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGSVA 306
           DE+  +A+ FN F  K+  M+  +    Q + + ++        +NQ       E   VA
Sbjct: 414 DELGAIANGFNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVA 473

Query: 307 TAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAITQ 366
           TAV++M +T  ++A N  QAA AA+     A Q   ++ +T      L +E+  +  + Q
Sbjct: 474 TAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVGVVQ 533

Query: 367 KLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRTQD 426
            L + S  I +IL  IR IAEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA +TQ 
Sbjct: 534 TLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQK 593

Query: 427 STNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMNTQ 486
           +T EIQ +I ++Q G   V++    +Q +++E    A +A +A+  I + ++ I+DMNTQ
Sbjct: 594 ATEEIQAMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETISQAVSVINDMNTQ 653

Query: 487 LASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTLGQFKI 545
           +ASA EEQS V E+INRN+ NI ++        + +S A+  L  +++     + QFK+
Sbjct: 654 IASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFKV 712