Pairwise Alignments

Query, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 540 a.a., Methyl-accepting chemotaxis protein 4 from Alteromonas macleodii MIT1002

 Score =  265 bits (676), Expect = 4e-75
 Identities = 158/542 (29%), Positives = 287/542 (52%), Gaps = 3/542 (0%)

Query: 4   FLRQFTILKRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWLQIDGQLGSILSVIDVYR 63
           +LR+F++++RL +++ +  +  V   +  +   Y  L ++ + +    +  + +++  + 
Sbjct: 2   WLRKFSLIQRLGIIVALITLLFVLLTAVVLNRHYEALKQKSYDENQHLVEVVHTMLSSF- 60

Query: 64  QDAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQNFTL 123
             AA   + E  A++ A   +   RY G  YF + D    ++ H    ++ G   + F  
Sbjct: 61  --AARTDVDEATAKQQALEAVKALRYDGSNYFWIQDQTPSMVMHPIKPALDGQDLRTFKD 118

Query: 124 PNGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDV 183
            NG      +  + +  G+  ++Y    P  +   DK++  + +  WGWT+ +G YL+++
Sbjct: 119 GNGKAFFIEMAQKVKSKGEGFVDYVWPLPGEESPTDKISYVKEFKPWGWTVGSGIYLTNL 178

Query: 184 KESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLST 243
           ++    +     +   +  V +     V+  SI  P+ +  E ++DI+QGEGDL++ L  
Sbjct: 179 EKEFAHLRNVIAVFCLVSIVLVVVLVYVIGGSIVKPVQEVSERMKDISQGEGDLTRSLPE 238

Query: 244 QGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETG 303
            G+DEV  LA  FN + +K+   +  ++    SL   A+L+  + + SN  A+  +    
Sbjct: 239 TGQDEVTRLARYFNEYTEKMRHSLLGIRENINSLTQQAELVETSSKNSNAQAQTQNENML 298

Query: 304 SVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEA 363
            VA A+ +M +  +E+++N   A  + +S +   Q    V+D+TV D   L  ++++  +
Sbjct: 299 QVAAAMEEMTTQINEVSNNADSAEKSTSSARGNVQNGASVVDSTVNDIRSLTSDIESVSS 358

Query: 364 ITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANR 423
              +L   +  IG++LDVIR IAEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA+R
Sbjct: 359 AVTELAAQTESIGAVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASR 418

Query: 424 TQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDM 483
           T  ST+EIQ +I ++Q+   S + +   +Q  S +    A +A Q +     L+  I+DM
Sbjct: 419 TGQSTDEIQAMIEKLQSNAKSAVDAVKVSQSASTKTVDNAIQANQNLQEADRLMTEIADM 478

Query: 484 NTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTLGQF 543
           ++++A ATE+Q+    E N  I  +S   + S++  +  + A+Q+L+     +     +F
Sbjct: 479 SSEIARATEQQAEAATEANMRINALSGAADSSLRTADELAAASQALRASCIAIMDIANRF 538

Query: 544 KI 545
           K+
Sbjct: 539 KL 540