Pairwise Alignments

Query, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  308 bits (788), Expect = 7e-88
 Identities = 195/575 (33%), Positives = 310/575 (53%), Gaps = 24/575 (4%)

Query: 167 LTLIAEAARLASLAIERSRSLEFQRLAVKIFDRLPLALVITNASHSVLYANDAFKLMVCL 226
           L  I   ARL      R    E  R+A  +FD     +++T+    +++ N AF  +   
Sbjct: 67  LNFIGHGARL------RCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGY 120

Query: 227 QPDDILAFNPEQFFSPSEPHEIA---SLFNHLSEGKMWQGELVGLRNNGETFYLDLTVTV 283
           Q D+++   P +F   S  H +A    +F  L+E   W GE+   R +GE +    T+  
Sbjct: 121 QQDEVIGQRPSKF--KSGHHGLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICA 178

Query: 284 FRESHSADLGFAWLFSDVSERKKAAQLIKYQANNDSLTGLANRNALF--RQIQELINADS 341
            R+       +  +FSD+S  K + Q + Y A++D LTGL NR  LF  R  Q L  A +
Sbjct: 179 IRDDEGELSHYVAVFSDISAIKHSEQELAYLAHHDPLTGLPNR-LLFTDRLEQALAAAQA 237

Query: 342 LTPGFSFMLMDLDNFKQVNDTYGHDKGDVLLVQMVEQVKICLDPQAVFARLGGDEFAILL 401
              G + +L+DLD+F+ +ND  GH  GD LL  + E++   L      ARLGGDEF +L+
Sbjct: 238 NKRGCALLLLDLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLV 297

Query: 402 PGVVTQRELSQLADKINKQVYRRYELSHDKGVYSSVSIGIARFPEDALDLEQLLNCADQA 461
                  +  +LA  I +++   ++   ++ ++ S S+GI+ +P DAL  EQLL  AD A
Sbjct: 298 ENCQQVGQAGKLAQCIIERMREPFQFDGNR-LFISASVGISLYPSDALGAEQLLRNADSA 356

Query: 462 MYISKANGRNRYHFFTEQMQQNAERIANLHTLLKQALEQNAFELYFQPIVDATTGLIVRA 521
           +Y +K+NGR  Y  +TE++  +A+        L++ALEQ+   +YFQP+ D  +G  V  
Sbjct: 357 LYKAKSNGRACYALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGV 416

Query: 522 EVLLRWQHEGQ-FISPDEFIPIAENSGLIVSIGRCVRQAVMQTIVEMQALGWPMS-LAIN 579
           E L+RWQH  +  + P EFIPIAE +GLI  I   V +   + +V+ QA G  ++ + +N
Sbjct: 417 ETLVRWQHPRRGLVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVN 476

Query: 580 VSTFEFWSHELQDEFCDSFTDIIEGLGVEDFPYELITLEITESLLMKKHAHLIQVLNELR 639
           +S+  F  HEL       +  + E L        L+ LE+TES +M+     ++ L+ LR
Sbjct: 477 ISSRLFGQHEL-------YRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLR 529

Query: 640 ARGIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLAEGERHLALIEAIVRLSHALN 699
             G+ +++DDFGTGYSSL  L   P+ ++KID+ F+  L   E  +A++  I+ L+ ++ 
Sbjct: 530 ELGVTLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMG 589

Query: 700 LRVTAEGVETQEQLQVMMDNHIQEIQGYLFYKPIP 734
           ++V AEG+E  EQ   ++    Q  QGY F +P+P
Sbjct: 590 MQVHAEGIEQAEQASFLLQEECQLGQGYWFGRPVP 624