Pairwise Alignments

Query, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 475 a.a., integrase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  147 bits (370), Expect = 6e-40
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 40  LDNITDEQLTAYFRYLNLEWHHSRATLKLQLNGIHFFYEHVLKRDFTI--QLSLPKRPHK 97
           ++  ++EQ+  Y R +     +S + +   +N + F+Y+ VL R      Q+  P++P +
Sbjct: 239 INAFSEEQINHYHRSMVQAGTYSVSFINQSINAVKFYYQRVLSRHEVQLNQVERPEKPER 298

Query: 98  LPQLLSCQDIAALLYHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGK 157
           LPQ+LS QD+  +L    NLK R +L L Y  GLR+ E+ ++++ D+  +R LL +  GK
Sbjct: 299 LPQVLSKQDVLKILSATDNLKHRCLLQLLYAGGLRIGEVINLRLTDVQSERNLLLIRGGK 358

Query: 158 GACDRWVILSPTLLILLRQYWQAYHPVEWLF-ASTYHDVVYPLHESTFRKALAKAARLAS 216
           G  DR  +LS  LL  LR Y++AY P  WLF   T          + FR +  K    A 
Sbjct: 359 GKKDRTTLLSQRLLENLRAYYKAYRPKVWLFEGQTGGQYTVESIRNVFRASKEK----AG 414

Query: 217 ITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLH 261
           +  P +PH+LRH++ATH L+ G  L  +Q  LGH S K+TE Y H
Sbjct: 415 VKAPATPHTLRHSFATHLLEQGTDLRYIQVLLGHRSSKTTEVYTH 459