Pairwise Alignments

Query, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 285 a.a., integrase from Magnetospirillum magneticum AMB-1

 Score =  147 bits (371), Expect = 3e-40
 Identities = 85/263 (32%), Positives = 142/263 (53%), Gaps = 11/263 (4%)

Query: 1   MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPLDNITDEQLTAYFRYL---NL 57
           MS L ++  +++++R  S  T+ +YL+A+++   + N+  D +  + +  +  +L    +
Sbjct: 4   MSPLRRRMIEDMTVRNLSPATQRSYLHAVSKFSRFFNRSPDRLDHDDVRTWQVHLVSQGI 63

Query: 58  EWHHSRATLKLQLNGIHFFYEHVLK-RDFTIQLSLPKRPHKLPQLLSCQDIAALLYHCQN 116
            W    A+L   +  + FFY   L+  +   ++   ++P +LP +LS  ++   L    +
Sbjct: 64  SW----ASLNQFVAALRFFYGVTLRCPEIPERIVYARQPRRLPIVLSADEVVRFLEAVPS 119

Query: 117 LKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILLRQ 176
           LK R  L   Y  GLRVSE+  +K+ADID  R +++V QGKG  DR+V+LS  LL +LR 
Sbjct: 120 LKNRTALTTAYATGLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQLLGILRT 179

Query: 177 YWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQ 236
           YW    P  WLF         P+  +    A   A   A I K  + H+LRH++ATH L+
Sbjct: 180 YWPLARPEHWLFPGREDK---PIEPTVLNSACRSACVAAGIDKRVTVHTLRHSFATHLLE 236

Query: 237 AGMPLHQLQAQLGHHSIKSTERY 259
           AG  +  +Q  LGH+++ +T RY
Sbjct: 237 AGTDIRIIQVLLGHNNLSTTARY 259