Pairwise Alignments

Query, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Serratia liquefaciens MT49

 Score = 94.4 bits (233), Expect = 3e-24
 Identities = 82/283 (28%), Positives = 137/283 (48%), Gaps = 23/283 (8%)

Query: 3   SLLQQFHDEISL-RGYSARTRNAYLYAITQLQHYANQPLDNITDEQLTAYFRYL--NLEW 59
           +L++QF D + L R  +  T  +Y   +  L  + NQ   ++   Q      +L   +E 
Sbjct: 7   ALIEQFLDALWLERNLAENTLASYRLDLQALVAWLNQQNISLVKAQALDLQAFLAERVEG 66

Query: 60  HHSRATLKLQLNGIHFFYEHVLKR-----DFTIQLSLPKRPHKLPQLLSCQDIAALLYH- 113
            +   +    L+ +   ++++ +      D T  L+ PK P +LP+ LS   + ALL   
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYRENMRTDDPTALLASPKLPQRLPKDLSEAQVDALLQAP 126

Query: 114 CQN----LKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPT 169
           C +    L+ +AML + Y  GLRVSEL  + ++D+  ++ +++V  GKG  +R V L   
Sbjct: 127 CVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVI-GKGNKERLVPLGEE 185

Query: 170 LLILLRQYWQAYHPVEWLFASTYHDVVYP------LHESTFRKALAKAARLASI-TKPCS 222
            +  +  Y +   P  W+      DV++P      +   TF   +   A LA I ++  S
Sbjct: 186 AVYWIENYLEHGRP--WMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGIDSERLS 243

Query: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265
           PH LRHA+ATH L  G  L  +Q  LGH  + +T+ Y H + E
Sbjct: 244 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 286