Pairwise Alignments

Query, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 295 a.a., tyrosine recombinase XerD from Kangiella aquimarina DSM 16071

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 26/284 (9%)

Query: 3   SLLQQFHDEISL-RGYSARTRNAY---LYAITQLQHYANQPLDNITDEQLTAYFRYLNLE 58
           S+++QF D+I + +G S  T ++Y   L    Q      + L N     +  Y      +
Sbjct: 4   SIIEQFCDQIWMEQGLSDATLSSYRSDLKLFNQWLQKQGKTLTNSGASDIQQYLAERYSK 63

Query: 59  WHHSRATLKLQLNGIHFFYEHVL-----KRDFTIQLSLPKRPHKLPQLLSCQDIAALLYH 113
            + SR+T +  L+    FY ++L     K D T Q+  PK    +P+ LS  ++ +LL  
Sbjct: 64  QYSSRSTARF-LSSARKFYRYLLQSNHIKVDPTQQIESPKIQPPVPKSLSEDEVDSLLSQ 122

Query: 114 -----CQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSP 168
                   L+ +AML L Y  GLR++EL  +++  I  Q+ +++V  GKG  +R V +  
Sbjct: 123 PDLDTALGLRDKAMLELLYSSGLRITELISVEMNQIGFQQGVMRVI-GKGNKERIVPIGE 181

Query: 169 TLLILLRQYWQAYHP-------VEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPC 221
             L  +  Y +            +WLF ST       +   TF   +   A+ A I K  
Sbjct: 182 EALQAIAHYIRYGRAELSKEKVTDWLFLSTRGQ---RMTRQTFWHRIKFYAKTAGIRKHL 238

Query: 222 SPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265
           SPH+LRHA+ATH L  G  L  LQ  LGH  + +T+ Y + + E
Sbjct: 239 SPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTYVAKE 282