Pairwise Alignments

Query, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 321 a.a., integron integrase from Kangiella aquimarina DSM 16071

 Score =  113 bits (283), Expect = 5e-30
 Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 44/303 (14%)

Query: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQ-LQHYANQPLDNITDEQLTAYFRYLNLEWH 60
           S  LQ     +    YS +T   YLY I   ++++  +   N++D  ++ Y  +L ++ +
Sbjct: 4   SPFLQSIRHYLRTNHYSYQTEKCYLYWIKDFIRYHRMEHPQNLSDADVSNYLSFLVVKRN 63

Query: 61  HSRATLKLQLNGIHFFYEHVLKRDFTIQ--LSLPKRPHKLPQLLSCQDIAALLYHCQNLK 118
            SR+T K  LN + F Y  ++     +   ++  K+P +LP + S  +++ + +     +
Sbjct: 64  VSRSTQKQALNALAFLYRDIIGNPLGVLPGITRSKKPVRLPTVFSHDEVSRI-FSVLTGE 122

Query: 119 QRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL---- 174
            + + +L YG G+R+SE   +++ DID  R  + V Q KG  DR  ILS     LL    
Sbjct: 123 YKVIASLLYGSGMRISEALSLRIKDIDFTRSTVTVRQSKGEKDRVTILSKLSAQLLSDHF 182

Query: 175 --------------------------RQYWQAYHPVEWLF----ASTYHDVV------YP 198
                                     ++Y  AY    W F    ++   D++      + 
Sbjct: 183 SQLKINYDSLKLDSDWPGVHLPNALGKKYPNAYRSWGWQFVFPSSTNPPDLITGVRRGFH 242

Query: 199 LHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTER 258
            H  T  + L +A + A ITK  S H+ RH++ATH L+AG  +  +Q  LGH S+++T+ 
Sbjct: 243 RHPRTIGRVLNRAFKQAKITKHASSHAFRHSFATHLLEAGYDIRTVQELLGHKSVETTQI 302

Query: 259 YLH 261
           Y H
Sbjct: 303 YTH 305