Pairwise Alignments

Query, 269 a.a., OmpA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 219 a.a., predicted outer membrane lipoprotien (NCBI) from Escherichia coli BW25113

 Score = 60.5 bits (145), Expect = 3e-14
 Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 39/221 (17%)

Query: 46  EEDDGEALIGLGGGALLGALVGG--------PVGAVVGGITGTLIGQSVADTELVSVTLK 97
           E + G++ IG G G+L+GA +G           GA++G   G  +G  V           
Sbjct: 29  EREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVG---------- 78

Query: 98  NPQQHIAVQRQQVTSLTVKQLASEQRAAEYASTQKHLDALLAEQQQLLSELALGMNVQFR 157
               ++ VQ  +        L  + R    + T+   + +L           +  NV F 
Sbjct: 79  ---YYMDVQEAK--------LRDKMRGTGVSVTRSGDNIILN----------MPNNVTFD 117

Query: 158 TGSSELEADFLPQLDNVATVMKRSSESNLELKGYAERRGDWRDNQSLSEHRLLEVRDYLI 217
           + S+ L+      L  VA V+K   ++ + + GY +  G    N  LS+ R   V   LI
Sbjct: 118 SSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALI 177

Query: 218 QQGVAPARMTTQALGAAMSLNEQLDSESDVSDRRVTLTIPP 258
            QGV  +R+ TQ LG A  +     +E    +RRV +T+ P
Sbjct: 178 TQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP 218