Pairwise Alignments

Query, 269 a.a., OmpA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 220 a.a., porin from Agrobacterium fabrum C58

 Score = 65.1 bits (157), Expect = 1e-15
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)

Query: 50  GEALIGLGGGALLGALVGG-PVG----AVVGGITGTLIGQSVADTELVSVTLKNPQQHIA 104
           G A IG   GAL G  VGG PVG    A++G   G L G ++ +       +   +  + 
Sbjct: 35  GGAGIGAVVGALGGLAVGGSPVGRRNAALIGAGIGALAGGAIGNY------MDGQEAELR 88

Query: 105 VQRQQVTSLTVKQLASEQRAAEYASTQKHLDALLAEQQQLLSELALGMNVQFRTGSSELE 164
            Q Q                    S  +  D+++         L +  N+ F T   ++ 
Sbjct: 89  AQLQGTG----------------VSVTRRGDSIV---------LNMPSNITFATDQDQVI 123

Query: 165 ADFLPQLDNVATVMKRSSESNLELKGYAERRGDWRDNQSLSEHRLLEVRDYLIQQGVAPA 224
             F   LD+VA V+ + + + +++ G+ +  G  + NQ+LSE R   V +YL  +GV   
Sbjct: 124 PPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHNQALSERRAASVANYLGARGVDQR 183

Query: 225 RMTTQALGAAMSLNEQLDSESDVSDRRVTLTIPPTQG 261
           R++T   G +  +     S+    +RRV + I P +G
Sbjct: 184 RISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLKG 220