Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 233 a.a., transcriptional regulator from Pseudomonas simiae WCS417

 Score =  124 bits (311), Expect = 2e-33
 Identities = 81/227 (35%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 1   MKRIAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEID 60
           M  I +VED+AA+ E     L+++GY V   +             PDL I+D+ L   +D
Sbjct: 1   MPNILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLTPPDLVILDLMLPG-LD 59

Query: 61  GGFMLCQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFR 120
           G   +C+ LRA S  LPI+ LTARD   D V GL +GADDY++K      L AR+  L R
Sbjct: 60  G-LQVCRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118

Query: 121 RSELAASQTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHVRSRH 180
           RS L+  Q   + ++  G L ID +   V W +  +EL+  E+ ++  LA+H G V SR 
Sbjct: 119 RSSLSEPQVANDQII-MGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRD 177

Query: 181 ELMQEAK---IFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGY 224
           +++Q  +       D ++   + ++R+KF   A E   I TV+G GY
Sbjct: 178 QILQRLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGY 224