Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 229 a.a., phosphate response regulator transcription factor PhoB from Pectobacterium carotovorum WPP14

 Score =  124 bits (312), Expect = 1e-33
 Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 2   KRIAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEIDG 61
           KRI +VEDEA IRE    VL+Q+GY      D  SA+   +   P+L ++D  L      
Sbjct: 3   KRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLPGGSGL 62

Query: 62  GFMLCQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFRR 121
            F+      A++  +P++ LTAR  + D V GL +GADDY++K  S   L AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 122 SELAASQTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHVRSRHE 181
                S    E ++E   L++D +  +V   + A+++  TEF ++H    HP  V SR +
Sbjct: 123 ----ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQ 178

Query: 182 LMQE---AKIFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGYRWDS 228
           L+       ++V+D T+  H++R+RK    +  +   + TV G GYR+ +
Sbjct: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALETSGHD-KMVQTVRGTGYRFST 227