Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 229 a.a., DNA-binding response regulator from Magnetospirillum magneticum AMB-1

 Score =  134 bits (336), Expect = 2e-36
 Identities = 88/234 (37%), Positives = 133/234 (56%), Gaps = 13/234 (5%)

Query: 1   MKRIAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEID 60
           M++I +V+D+  IR+  +  L++ G +V    +   A+       PDL ++DI +  E+D
Sbjct: 1   MQKILLVDDDPHIRDMVRFALRREGLAVVEAENGVEALERAEAEAPDLIVLDIMMP-EMD 59

Query: 61  GGFMLCQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFR 120
           G   +C+ LR  S  +PIIFL++RD + D V GL LG DDY+ K  S   L AR+ A+ R
Sbjct: 60  GT-EVCRRLRRHSR-VPIIFLSSRDDEIDRVLGLELGGDDYVGKPFSPRELVARVKAVLR 117

Query: 121 RSELAASQTPQ---ENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHVR 177
           R  +   Q+P    +  L  G L +D    + +W++  + LTVTEF ++  LA+ PG V 
Sbjct: 118 R--MQPDQSPDAIAKTELRCGRLRLDLEGFRAFWDEAEVVLTVTEFSILRTLAERPGKVF 175

Query: 178 SRHELMQEAKI---FVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGYRWDS 228
           SR  LM  A     +V D TI SHV+R+R KF AA      ++TV+G+GY+  S
Sbjct: 176 SRDGLMDGAYALDHYVSDRTIDSHVRRVRAKFQAAGG--GPVETVHGLGYKLSS 227