Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 220 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Kangiella aquimarina DSM 16071

 Score =  120 bits (301), Expect = 2e-32
 Identities = 86/227 (37%), Positives = 118/227 (51%), Gaps = 14/227 (6%)

Query: 4   IAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEIDGGF 63
           I IVEDE  + E  +D L + GY V+        M   N     L ++D+ L      G 
Sbjct: 5   ILIVEDEVKLAELMRDYLIREGYEVEMLHRGDEVMPWLNKHSARLILLDLMLPGM--DGL 62

Query: 64  MLCQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFRRSE 123
            LC+ +R  SN LPII +TAR  + D + GL  GADDY+ K  S   + AR+AA+ RR E
Sbjct: 63  SLCRDIRKNSN-LPIIMVTARVEEIDRLLGLSSGADDYICKPFSPREVCARVAAVLRRVE 121

Query: 124 LAASQTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHVRSRHELM 183
             A  T Q+       L ID  + QV      +ELT  EF ++  LAK PG V SR +LM
Sbjct: 122 GMA--TAQDT------LEIDEEKYQVRAGGQVLELTALEFRLISTLAKQPGRVFSRDQLM 173

Query: 184 QEA---KIFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGYRWD 227
                 +  V + TI SHVK++RKK        + I ++YG+GY++D
Sbjct: 174 DAIYTDQRLVSERTIDSHVKKLRKKLEQLPLADNPIRSIYGVGYKFD 220