Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 241 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  163 bits (412), Expect = 3e-45
 Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 17/244 (6%)

Query: 1   MKRIAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEID 60
           M+ IA+V+D+  I  +    L+  GY V+TY D  SA+     R P LAI DI +     
Sbjct: 1   MQTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDIKMPRM-- 58

Query: 61  GGFMLCQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFR 120
            G  L + LR  S+ +P+IFLT++D + D + GL++GADD+++K  S   L  R+ A+ R
Sbjct: 59  DGMELLRRLRQKSD-IPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 117

Query: 121 RSE-----------LAASQTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHAL 169
           R+            L  +   Q   LERG L +D  R    W    + LTVTEF ++H+L
Sbjct: 118 RASSREASAATGGTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSL 177

Query: 170 AKHPGHVRSRHELMQEA---KIFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGYRW 226
           A+ PG V+SR  LM  A   +++VDD TI SH+KR+RKKF     +FD I+T+YG+GYR+
Sbjct: 178 AQRPGVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKLVDGDFDMIETLYGVGYRF 237

Query: 227 DSLA 230
              A
Sbjct: 238 REAA 241