Pairwise Alignments

Query, 687 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 537 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  130 bits (328), Expect = 1e-34
 Identities = 109/406 (26%), Positives = 196/406 (48%), Gaps = 36/406 (8%)

Query: 293 WQRFQ-RDYLHPLYYKILTKPPKDFIDSLRDSTELNGSHIQKALAGQQTSTWRL-TPDNK 350
           W R+  RD   PLY  I      DF +++             A+AG+  + W + T  N 
Sbjct: 152 WARWMPRDESLPLYRDIANARADDFEEAM------------SAMAGR--AAWAVRTRKNG 197

Query: 351 AVVLAAASPIWIDNNVMGAVVAEETTHGIRTLRNRALEKLFNVILTIMSMGTLAL----- 405
            ++L+ A P+     V+GA++   T  G    R+     LF V + I+    ++L     
Sbjct: 198 TLMLSVAVPVQRYKQVVGALLI--TADGTNIARS-----LFQVRIAILQAFAVSLALTIG 250

Query: 406 --FFFASSISNRIRKLRDEAENAIDSQGRVRNHLKPSKARDEIGDLSRSFASIVGRLGQY 463
              + A +I+  IR+L   AE     QGRV      S  +DEIG+LS +   +   L + 
Sbjct: 251 VSLYMAGTIARPIRRLALAAERVRHGQGRVHAIPDLSHRKDEIGELSVALKEMTEALWRR 310

Query: 464 THYLENMSSRLSHELRTPVAVVRSSLEHL-NLQTLDKDTQKYVDRAQEGVSRLSMILNNM 522
              +E  ++ ++HE++ P+  +RS++E    ++  DK   + +    + V RL  +++++
Sbjct: 311 MDAIEAFAADVAHEIKNPLTSLRSAVETAARIEDPDKRA-RLMSIVLDDVGRLDRLISDI 369

Query: 523 SEATRLEQSLTQADVTKFPLSQVVSGCMQGYQMTYPEQ--RFSIKVPD-QPLMMQGVPEY 579
           S+A+ ++  +++A+     L+ ++    + Y+ T  ++  RF ++ P+   L +QG+   
Sbjct: 370 SDASHIDAEMSRAETGPVALAAMLDTLAEIYRGTCEDRGLRFEVERPEGDALTVQGIESR 429

Query: 580 IAQLMDKLIANAIEFCHQGSSIEVTLTQVGKQATLLISNLGPQLPVDMSEQIFDSMVSVR 639
           + Q++  LIANA  F   G  I +   + G +  L++ + GP +P +  + IF+   S R
Sbjct: 430 LVQVLRNLIANAASFSPDGGLIRLAAHRDGGRIALVVEDQGPGIPANKLDAIFERFYSER 489

Query: 640 DNQTQEKPHLGLGLYIARLVTEFHQGNILARNRSENDGVDILVTLP 685
               +   H GLGL I+R + E H G I A NR E  G    V +P
Sbjct: 490 PEGEKFGTHSGLGLSISRQIVEAHGGAIRAENRDEG-GARFTVDIP 534