Pairwise Alignments

Query, 687 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 670 a.a., Signal transduction histidine kinase from Kangiella aquimarina DSM 16071

 Score =  219 bits (557), Expect = 4e-61
 Identities = 177/659 (26%), Positives = 306/659 (46%), Gaps = 64/659 (9%)

Query: 29  KLFDGQASFLKQVEKSRDLYAYPLA---GAILLDGKLNEWQEYQHRFIQYGEANQIMRAD 85
           +L     S  +Q   +     +P+A    A+L+DG  +EW  YQ        +  I    
Sbjct: 56  QLLQTDRSLQQQFLNTNQQKQFPIALKETALLVDGYSDEWYPYQ------SASTVIRNFG 109

Query: 86  PSAPLTLSFTHMVGQYDGYLYAFFQVVDPNVVFRGKNALSVDRNDHLSIATLAPDNKFKR 145
            +A LTL       +   ++Y  F+V D ++V+R +  L V  +D +++   A   +F  
Sbjct: 110 QNASLTLI------EDKDFVYGLFEVEDNSIVYRERLDL-VGLSDKITLVLGAYQMQF-- 160

Query: 146 YIVATTQPGWISAFELPANPKQTVPVTPEVRIQGQWATTDVGYNIELRIPLDMVGSKLGF 205
                  PG + A    A+  + V  TP   +   W     GY +E RIP  +VG  +  
Sbjct: 161 ---LPMAPGKVPALRQTADGYREV--TP---VYAVWQERTEGYQLEFRIPQSLVGKTISA 212

Query: 206 AIADVNDSKYRDVAAVVGTSALDTVDKLGTVLVPSPEIENIIKGMSHYSSRIWVIDKHGR 265
            I D++  + +   A+ G  +    + L    + S     ++  +     R+ + +  G 
Sbjct: 213 EITDID--RAQSGVALQGIYSFTNFESLS---LHSRLQSGVLSLLEPEMYRLTLTNNQGE 267

Query: 266 VLAKSGDIR-DSNSVWTRTLDDENSNGLWQRFQRDYLHPLYYKILTKPPKDFIDSLRDST 324
           VL + G +  D  S W         N +W    ++ L                DSL    
Sbjct: 268 VLYQFGQLHTDIRSNWR--------NRIWSSATQEKLS---------------DSLLGKK 304

Query: 325 ELNGSHIQKALAGQQTSTWRLTPDNKAVVLAAASPIWIDNNVMGAVVAEETTHGIRTLRN 384
            ++   +  A  G+ T T  +     +       P++ +N ++GA++ E +    + L+ 
Sbjct: 305 SISSVSLDLAFTGR-TQTEVVNSSQLSAFSRVYKPLYSNNQLVGAMILESSPVNEK-LQL 362

Query: 385 RALEKLFNVILTIMSMGTLALFFFASS--ISNRIRKLRDEAENAIDSQGRVRNHLKPSKA 442
           R     F ++L ++  G    +    S   S RI +LRD  E +I  +G++R  +   + 
Sbjct: 363 RDFWLRFLLLLGLV-WGLFVWWLVKQSRRYSRRIMELRDLTEGSISEEGQIRYVIDMDEE 421

Query: 443 -RDEIGDLSRSFASIVGRLGQYTHYLENMSSRLSHELRTPVAVVRSSLEHLNLQTLDKDT 501
             DE+ DL+ SF+ +  RL QY  Y E + SRL+HELRTP+A++RSSL+++N  +L +D 
Sbjct: 422 FDDEVSDLTNSFSLLTNRLKQYHDYQEKLVSRLNHELRTPIAIIRSSLDNINRDSLSEDE 481

Query: 502 QKYVDRAQEGVSRLSMILNNMSEATRLEQSLTQADVTKFPLSQVVSGCMQGYQMTYPEQR 561
            + +D AQ G  R+S  ++ +SEA +LEQ++  AD   F +  V+   +  Y+  + E  
Sbjct: 482 LQLIDNAQSGAVRMSQTISRLSEANKLEQAIRSADKEPFDMLPVLKDLVLAYRTNWHEHE 541

Query: 562 FSIKVPDQPLMMQGVPEYIAQLMDKLIANAIEFCHQGSSIEVTLTQVGKQATLLISNLGP 621
           F +    +   + G  +   Q++DKLI+NA++F ++   I++ L +  +Q  L +SN GP
Sbjct: 542 FELVSDLEEARVLGSKDLFVQMLDKLISNAVDFDNKTRPIQIALKRKDRQLVLSVSNGGP 601

Query: 622 QLPVDMSEQIFDSMVSVRDNQTQEKPHLGLGLYIARLVTEFHQGNILARNRSENDGVDI 680
            +       +F  M S R +  Q   HLGLGLY+ARL+  FH   + A N+ +  GV I
Sbjct: 602 TIARKHLHDVFSLMHSSRKHSNQ---HLGLGLYVARLIASFHGAKVNAENQIDGTGVTI 657