Pairwise Alignments

Query, 687 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 469 a.a., two component sensor kinase from Agrobacterium fabrum C58

 Score = 91.7 bits (226), Expect = 7e-23
 Identities = 86/349 (24%), Positives = 160/349 (45%), Gaps = 30/349 (8%)

Query: 354 LAAASPIWIDNNV---MGAVVAEETTHGIRTLRNRALEKLFNVILTIMSMGTLALFF-FA 409
           LA A+   +DN +   +G  + E T    R L   AL     V L IMS G L ++F   
Sbjct: 132 LATANVFMLDNGLRILIGRDLGEPTK--FRALVRNALM----VALAIMSGGALLIWFGIG 185

Query: 410 SSISNRIRKLRDEAENAIDSQGRVRNHLKPSKARDEIGDLSRSFASIVGRLGQYTHYLEN 469
            +   RI ++    +  I   G +   L   ++ DE   LS S  +++GR+ +    L  
Sbjct: 186 RNALKRIDRMSAATKRII--AGDLSQRLPQGRSGDEFDRLSGSLNAMLGRIEKLNEGLRQ 243

Query: 470 MSSRLSHELRTPVAVVRSSLEHLNLQTLDKDTQKYVDRAQEGV----SRLSMILNNMSEA 525
           +S  ++H+L+TP+  +R+         LD + +     A EG+     +L    N +   
Sbjct: 244 VSDNIAHDLKTPLTRLRNKA----AAALDDNDETKRRAALEGIIAESDQLIRTFNALLMI 299

Query: 526 TRLEQSLTQADVTKFPLSQVVSGCMQGYQMTYPEQRFSIKVPDQP-LMMQGVPEYIAQLM 584
           +R+E     A++T   +S + +   + Y+    +   +++   +P L +QG  E I Q +
Sbjct: 300 SRVEAGSIAAEMTDVDMSAIAADSAELYEPVAEDAGLALESQIEPGLSVQGNRELIGQAL 359

Query: 585 DKLIANAIEFCHQG---SSIEVTLTQVGKQATLLISNLGPQLPVDMSEQIFDSMVSVRDN 641
             LI NA+++  +G     + V L +  +   L +++ GP +P D   ++      VR +
Sbjct: 360 SNLIDNAMKYACEGEGDKKLVVRLVKEPEAIVLSVADHGPGIPADKRGEVLKRF--VRLD 417

Query: 642 QTQEKPHLGLGLYIARLVTEFHQGNILARNRSEND----GVDILVTLPL 686
           +++ KP  GLGL +   V E H G+++  +    +    G+ I +  P+
Sbjct: 418 ESRSKPGTGLGLSLVEAVMELHGGSLVLSDTDATNTACPGLTISMVFPI 466