Pairwise Alignments

Query, 484 a.a., hypothetical heat shock protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 620 a.a., chaperone protein HscA from Pseudomonas simiae WCS417

 Score = 55.5 bits (132), Expect = 5e-12
 Identities = 110/473 (23%), Positives = 176/473 (37%), Gaps = 136/473 (28%)

Query: 3   VGFDYGSANCAVGIMQGDEVSLLPLSTDSAYLPSTL-YAMDRELIAEAVYRALPAE-LKA 60
           VG D G+ N  V  ++      LP +     LPS + Y  DR  + E+   A   + L  
Sbjct: 22  VGIDLGTTNSLVAALRSGLSEPLPDADGQVILPSAVRYHADRTEVGESAKLAASTDPLNT 81

Query: 61  DYAKKRAAQLSRARMVRHELDLDAESPAVFVGEQAVAAYLEMPEEGFYVRSPKSFLGATG 120
             + KR       R +     L  + P  FVG ++   +++       V+ PKS      
Sbjct: 82  VLSVKRLM----GRGLSDVKQLGDQLPYRFVGGESHMPFIDT------VQGPKS------ 125

Query: 121 LRPEQVALFEDIVTLMMQHIKVRAEAVLVQKGMASKDEARITHAVIGRPVNFQGIGGEES 180
                V +  DI+ ++ Q    RAE  L            +  AVI  P  F     +++
Sbjct: 126 ----PVEVSADILKVLRQ----RAEKTL---------GGELVGAVITVPAYF-----DDA 163

Query: 181 NRQAEAILTLAAKRAGFVDVAFLFEPLAAGMDYEAGLKADQTVLVVDVGGGTTDCSVVKM 240
            RQA      AAK AG   +  L EP AA + Y     A+  V + D+GGGT D S++++
Sbjct: 164 QRQATKD---AAKLAGLNVLRLLNEPTAAAVAYGLDQHAEGLVAIYDLGGGTFDISILRL 220

Query: 241 GPSHKASFDRSRDCLGHSGQRIGGNDLDIALAMNAFMPHFGLGSLMSNGKPMPSNPFWNA 300
                       D        +GG+D D A+A          G ++S+            
Sbjct: 221 TGGVFEVLATGGD------SALGGDDFDHAIA----------GWIISSA----------- 253

Query: 301 VAVNDISAQREFATLSTRKLIDELIKEAEQPNLLKRLLKVQQQQLSYQIVRLAERAKIAL 360
                +SA                +   EQ NLL                + A  AK AL
Sbjct: 254 ----GLSAD---------------LDPGEQRNLL----------------QTACAAKEAL 278

Query: 361 SDAHTTESSLEFIEAMLSAEVNRDCFENAIEPSLGKIEALMHQALTQAAKSLTGNGLAPE 420
           +DA T E S        SA++ R+ F+  IEP       ++ ++L    +++  +G+  E
Sbjct: 279 TDAATVEVSY----GTWSAQLTREAFDALIEP-------MVARSLKACRRAVRDSGIELE 327

Query: 421 ELSVEAGTAECQPDVIYVTGGTARSPAIYAKI---------TSLYPDTPVVVG 464
           ++             + + GG+ R P +   +         T + PD  V +G
Sbjct: 328 DVG-----------AVVMVGGSTRVPRVREAVAEAFGRQPLTEIDPDQVVAIG 369