Pairwise Alignments

Query, 342 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., nucleoid-associated protein from Pseudomonas simiae WCS417

 Score =  230 bits (587), Expect = 3e-65
 Identities = 125/335 (37%), Positives = 199/335 (59%), Gaps = 5/335 (1%)

Query: 5   IEQAIIHEISQDSQGQLRC-RLRPQPLLNGQAVEMMLEELHQTYTSKSGKGFGYFGIHGD 63
           I   I+H I +   G       R   L    A+E ML +L+++Y +K GK +G+F  H +
Sbjct: 3   IRHCIVHLIDKKPDGTPAVLHARDSELAESAAIENMLADLNESYNAKQGKAWGFF--HAE 60

Query: 64  DGEANPAFANALKEYRAGDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMASDY 123
            G A+P F+  LKEY  G   F  F+  A + LQ+ + + + S GG +L + Y    +DY
Sbjct: 61  SG-AHP-FSGWLKEYFDGGQDFTTFSRTAVEHLQKLMEESNLSTGGHVLFAHYQQGMTDY 118

Query: 124 LFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARIDLTELQADKDSRKYISFIRGRAG 183
           L +ALL     + V D+++++ + HLDL  + LAARI+++E Q +K S++YISFI+G+ G
Sbjct: 119 LAIALLHHSEGVAVTDELDVTPSRHLDLGQLHLAARINVSEWQNNKQSKQYISFIKGKNG 178

Query: 184 RKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKEERQQCRNKVFEYCSERFD 243
           +KV+++F DF+GC EGV+   + +TL+ A  DFV S DL  E  ++    + +Y S +  
Sbjct: 179 KKVSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPDESAREKTKTLVDYASSQAK 238

Query: 244 EGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGVTIS 303
            G  + +++L+  + +   ++FYD  R   Y L  E PADK TL Q ++F+G   G++IS
Sbjct: 239 LGEPMGLEELSGLIDEDRPKAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSIS 298

Query: 304 FDGGHLGQRVIYDPISDTILIKGVPANLKDQLDRR 338
           F+   LG ++ YD  + T++IKG+P  L DQL RR
Sbjct: 299 FEAHLLGDKIEYDEAAGTLIIKGLPTQLTDQLKRR 333