Pairwise Alignments

Query, 342 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., Nucleoid-associated protein PP_0973 from Pseudomonas putida KT2440

 Score =  221 bits (564), Expect = 2e-62
 Identities = 122/335 (36%), Positives = 197/335 (58%), Gaps = 5/335 (1%)

Query: 5   IEQAIIHEISQDSQGQLRC-RLRPQPLLNGQAVEMMLEELHQTYTSKSGKGFGYFGIHGD 63
           I   I+H I +   G       R   L    A+E +L +L+ +Y +K GK +G+F  HG+
Sbjct: 3   IRHCIVHLIDKKPDGSPAVLHARDSELAASDAIENLLADLNDSYNAKQGKAWGFF--HGE 60

Query: 64  DGEANPAFANALKEYRAGDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMASDY 123
            G A P  +  LK+Y   +  F  F+  A + LQ+ + + + S GG +L + Y    ++Y
Sbjct: 61  SG-AYP-LSGWLKQYLDEEKDFTAFSRVAVEHLQKLMEESNLSTGGHILFAHYQQGMTEY 118

Query: 124 LFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARIDLTELQADKDSRKYISFIRGRAG 183
           L +ALL     + V   ++++ + HLDL  + LAARI+L+E + +++SR+YISFI+G+ G
Sbjct: 119 LAIALLHHSEGVAVNAQLDVTPSRHLDLGQLHLAARINLSEWKNNQNSRQYISFIKGKNG 178

Query: 184 RKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKEERQQCRNKVFEYCSERFD 243
           +KV+D+F DF+GC EGV+   + +TL+ A  DFV S DL +E  ++    + EY + +  
Sbjct: 179 KKVSDYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEESAREKTQTLVEYATTQTK 238

Query: 244 EGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGVTIS 303
            G  + +++L+  + +   ++FYD  R   Y L  E PADK TL Q ++F+G   G++IS
Sbjct: 239 LGEPVTLEELSSLIDEDRPKAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSIS 298

Query: 304 FDGGHLGQRVIYDPISDTILIKGVPANLKDQLDRR 338
           F+   LG +V YD  + T++IKG+P  L DQL RR
Sbjct: 299 FEAHLLGDKVEYDEAAGTLIIKGLPTTLVDQLKRR 333