Pairwise Alignments

Query, 342 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 368 a.a., Nucleoid-associated protein YejK from Alteromonas macleodii MIT1002

 Score =  228 bits (581), Expect = 2e-64
 Identities = 127/364 (34%), Positives = 207/364 (56%), Gaps = 26/364 (7%)

Query: 1   MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEMMLEELHQTYTSKSGKGFGYF-- 58
           MS  I   ++H +  + + ++    R   L     +E++  +++ ++ +K GKG G+F  
Sbjct: 1   MSALIHHFVVHRLIVNKEEKIEAIPRDNCLAVTPEIELLAHQINHSFNAKPGKGVGHFVT 60

Query: 59  ------GIHGDDGEANPA--------FANALKEYR-----AGDL---GFVEFTGQASKLL 96
                  +  ++GEA           FA  LK+Y      AGD     F  F+  A+  L
Sbjct: 61  EVTREAKVENEEGEATTQKSTENVAEFAEGLKQYMDIQKAAGDNVEDAFHSFSVSATNRL 120

Query: 97  QEELAKYDFSQGGFLLMSCYTSMASDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQL 156
              LA+    + GFL+   Y  +A+ YL +ALL+ +S + V + ++LS   HLDL  +QL
Sbjct: 121 VRTLAETGTVETGFLIFCQYEYLATQYLMIALLNTRSHVEVTNSLDLSAREHLDLAKMQL 180

Query: 157 AARIDLTELQADKDSRKYISFIRGRAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDF 216
           A R DLT+     + ++Y+SFI+GR GRKV+DFF+ F+GC E V+ K QNK L+++V+ +
Sbjct: 181 AVRFDLTQWDIQPEQQRYVSFIKGRMGRKVSDFFMQFVGCEELVDVKQQNKQLISSVDAY 240

Query: 217 VASSDLTKEERQQCRNKVFEYCSERFDEGADIEIKDLADELA--DQGMESFYDFARGGSY 274
           +AS  L  +E+ Q R +V  Y  E+ D G  + + +LA+ L   ++   +F  F +    
Sbjct: 241 LASESLDPQEQHQHREEVKSYFKEKIDAGESLSVDELANRLPQNEETSSNFSAFTQSMEV 300

Query: 275 ELDEEFPADKSTLRQLKKFSGTGGGVTISFDGGHLGQRVIYDPISDTILIKGVPANLKDQ 334
            L++E   D + L+QL KF+G GGG+++SF+   +G RV YDP +DT+ I+G+P NLKDQ
Sbjct: 301 PLEKEIQPDPAALKQLAKFTGQGGGISLSFERKLMGDRVFYDPATDTLTIRGIPPNLKDQ 360

Query: 335 LDRR 338
           L+R+
Sbjct: 361 LNRQ 364