Pairwise Alignments

Query, 320 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 493 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  114 bits (284), Expect = 6e-30
 Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 12/178 (6%)

Query: 136 KSTAERLANTDELTKLYNRRAFFNLG---LSIAQQSGQALAFIMFDIDRFKHVNDRWGHT 192
           +++ E LA  D LT LYNRR+F  L    L  A++    L  ++ D+D FK +ND  GH 
Sbjct: 322 QASTEALATLDSLTGLYNRRSFDLLAAQALREARRDSSPLVALLIDLDHFKALNDNHGHL 381

Query: 193 TGDAALIHIAKLTQAILKPVDILGRLGGEEFGILLPDLHHEQACQLAESIRCRFEEQPLA 252
            GD  L   A + Q  L+  DIL R GGEEF +LL +    QA ++AE IR R E+   +
Sbjct: 382 AGDEVLRQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAIEVAEKIRRRTEQLTFS 441

Query: 253 LNGQIIKCTASFGIASITIPVIHSEKEAQNLLETLFNSADQAMMQAKRNGRNQVCSAT 310
            + Q ++ T S G++S+         +  + L  L   AD+A+ +AK+ GRN+VCS T
Sbjct: 442 YDNQPLRLTTSIGLSSL---------QPGDTLHALLTRADRALYRAKQAGRNRVCSET 490