Pairwise Alignments

Query, 320 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 477 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  113 bits (283), Expect = 8e-30
 Identities = 81/211 (38%), Positives = 106/211 (50%), Gaps = 24/211 (11%)

Query: 101 CRDQAIRWTDGRLVRIEIATDITDRKQMEEALIEAKSTAERLANTDELTKLYNRRAFFNL 160
           CR  A    D  +  I I TDIT+RK ME  L         LA TDELT   NRRAFF  
Sbjct: 284 CRGTA----DEPMGTIGIVTDITERKHMESQL-------RHLATTDELTGCLNRRAFFVA 332

Query: 161 G---LSIAQQSGQALAFIMFDIDRFKHVNDRWGHTTGDAALIHIAKLTQAILKPVDILGR 217
               L  A + G A++ +M DID FK VNDR GH  GD AL       +A L+ +D  GR
Sbjct: 333 AEQELERASRYGNAVSVLMIDIDHFKQVNDRHGHAVGDKALKAATAAIRANLREIDSFGR 392

Query: 218 LGGEEFGILLPDLHHEQACQLAESIRCRFE--EQPLALNGQIIKCTASFGIASITIPVIH 275
           LGGEEF  +LP+     A  +AE +R   E    PL  +   ++ T S G+A        
Sbjct: 393 LGGEEFAAMLPETTLAGALLVAERLRQAVEAIALPLGDDQPPLRLTTSLGVA-------- 444

Query: 276 SEKEAQNLLETLFNSADQAMMQAKRNGRNQV 306
             +  +  ++ +   AD A+ +AK  GRN+V
Sbjct: 445 ERQPGEVAVDQVLARADTALYRAKAEGRNRV 475