Pairwise Alignments

Query, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 698 a.a., RecBCD enzyme subunit RecD from Pseudomonas sp. RS175

 Score =  379 bits (972), Expect = e-109
 Identities = 276/709 (38%), Positives = 371/709 (52%), Gaps = 85/709 (11%)

Query: 23  LTELLKYWEKERLITALDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQHTCLVL-- 80
           L  LL  W +   + ALD+ F   +  L P+D  +PL +L  AL S QL   H CL L  
Sbjct: 30  LLRLLTRWVERGWLRALDKAFVAFLQELAPDD--DPLVLLAAALTSHQLGHGHVCLDLYE 87

Query: 81  -----EYIVPTNPMAE-PINRCQIRLSLTELIDALQ--------HFDAIGAPNSN----K 122
                ++ +   P  +       +   L + +D  Q           A+ A  S     +
Sbjct: 88  TLKEPDFALSLPPEGDLQAGAMLLPSQLLQTLDGAQWCRTLASSRLVALAADQSEEARQR 147

Query: 123 PLIFEDGRLYLERYHHFETQVASALTRLSAAALSLTPSQPLASDNQSLLQLRRQLDCLFP 182
           PL+    RLYL RY  +E ++  AL             Q LA  + +   LR +LD LF 
Sbjct: 148 PLVLSGKRLYLRRYWSYERRIDEALR------------QRLAERDAAPDDLRERLDGLFG 195

Query: 183 SAAHTVEANIDWQKVATATALGNKLAVITGGPGTGKTTTVTKLLLLQQL-----GTPKQI 237
           +AA      IDWQK+A A A     +++TGGPGTGKTTTV +LL L Q      G P +I
Sbjct: 196 TAAGP--GAIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVEAGKPLRI 253

Query: 238 RLVAPTGKAAARLSESIKASKARLEQELQQASKENPQENQVLLTALSRIPEEASTLHRLL 297
           RL APTGKAAARL+ESI  S+  L  E+  A +E             RIP + +T+HRLL
Sbjct: 254 RLAAPTGKAAARLTESI--SQQVLSLEVSAAVRE-------------RIPCDVTTVHRLL 298

Query: 298 GVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHAGLILLGDQDQLASV 357
           G  P + HFRHH GN L LD+L+VDEASM+DL MM  LL ALP  A L+LLGD+DQLASV
Sbjct: 299 GSRPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPAQARLVLLGDKDQLASV 358

Query: 358 EAGAVLADICAGLKQASTQHTEWKMRYSQAQAEQLTA--LTGFNLSHFIHSEPKIGDSLC 415
           EAGAVL D+C   ++       W    ++A  E ++   L   +L   +     +   + 
Sbjct: 359 EAGAVLGDLCRDAEEG------WYTPRTRAWLESVSGENLATSDLQQDLDGTHPLAQQVV 412

Query: 416 MLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQ-SGLAELTWLEHSVDHSQTQAKISEP 474
           ML HS RF   +GIG LA  VN+        + Q    A+L  L    +H     ++   
Sbjct: 413 MLRHSRRFGEGSGIGQLARWVNQQQAEKARQLLQGKQYADLFSLALKGEHDDGLERLLLE 472

Query: 475 SNNTGLKALLAQACEQYGDYLRLLQPTHATPIHTSEPFCPPSAMEAIAKFNQYRILCAMR 534
               G      Q    Y + LR  +P  + P+   +      A E ++ F+ +++LCA+R
Sbjct: 473 GRTEG-----PQGYRHYLNVLRQRRPDTSRPL--DDHCWADWAREVLSAFDAFQLLCAVR 525

Query: 535 TGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEER 594
            G +GVEG+N  +T AL +A+LI     +Y GRP+++  NDY LGL NGDIG+ L+  ER
Sbjct: 526 KGPWGVEGLNQRITAALLKARLIDSDHHWYEGRPVLMTRNDYGLGLMNGDIGIALRLPER 585

Query: 595 ------ADRLMAHFIKADGK--LLKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPPA 646
                    L   F + DG+  +  VLP+RL   ET YAMTVHKSQGSEF   AL+LP A
Sbjct: 586 EGPEAGKQVLRVAFPRNDGRGGVRFVLPSRLNDVETVYAMTVHKSQGSEFTHTALILPDA 645

Query: 647 PSLVQWQLLTKELIYTAITRAKQHFSCLGTQQ-VFERASLQATQRASGL 694
            + V    LTKEL+YTAITRAKQ FS +  +  VFE A  +  +R SGL
Sbjct: 646 LNPV----LTKELVYTAITRAKQWFSLIEPRAGVFEEAVRRKVKRLSGL 690