Pairwise Alignments

Query, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 619 a.a., exodeoxyribonuclease V subunit alpha from Pectobacterium carotovorum WPP14

 Score =  393 bits (1010), Expect = e-113
 Identities = 283/683 (41%), Positives = 370/683 (54%), Gaps = 100/683 (14%)

Query: 34  RLITALDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQHTCLVLEYIVPTNPM--AE 91
           RL+  LD  FA  +A     D  +P  +L  A LS    A H CL LE +         E
Sbjct: 12  RLLRPLDVQFARMLA-----DETQPDLLLAAACLSAHSGAGHVCLPLENLQAQTLFDGRE 66

Query: 92  PINRCQIRLSLTEL--IDALQH----FDAIGAPNSNKPLIFEDGRLYLERYHHFETQVAS 145
           P    Q  L+ T L  + A Q      DA+   +   PL+ +  +LYL+R    E +VA 
Sbjct: 67  P-ELAQQLLAGTGLNTVAAWQQRLLASDAVSDGSQPTPLVLQGEKLYLQRNWQSEGRVA- 124

Query: 146 ALTRLSAAALSLTPSQPLASDNQSLLQLRRQLDCLFPSAAHTVEANIDWQKVATATALGN 205
              R  A+     P    A        +R  LD LFP      +  I+WQKVA A AL  
Sbjct: 125 ---RFIASERDTIPVDEPA--------IRAVLDRLFPDT----DEEINWQKVAAAVALTR 169

Query: 206 KLAVITGGPGTGKTTTVTKLL---LLQQLGTPKQIRLVAPTGKAAARLSESIKASKARL- 261
           ++AVI+GGPGTGKTTTV KLL   +    G   +I+L APTGKAAARL+ES+  +  RL 
Sbjct: 170 RIAVISGGPGTGKTTTVAKLLAALIELNTGNALRIQLAAPTGKAAARLTESLGQALHRLA 229

Query: 262 -EQELQQASKENPQENQVLLTALSRIPEEASTLHRLLGVIPNSAHFRHHQGNPLRLDLLI 320
            +  L++A                  P+EA+TLHRLLG + +S   RHHQ NPL LD+LI
Sbjct: 230 VDPRLREA-----------------FPQEATTLHRLLGAVTDSQRLRHHQDNPLHLDVLI 272

Query: 321 VDEASMVDLPMMYKLLSALPEHAGLILLGDQDQLASVEAGAVLADICAGLKQASTQHTEW 380
           VDEASMVDLPMM  +++ALP HA +I LGD+DQLASVEAGAVL DIC   +         
Sbjct: 273 VDEASMVDLPMMANVIAALPPHARIIFLGDRDQLASVEAGAVLGDICRFAEAG------- 325

Query: 381 KMRYSQAQAEQLTALTGFNLSHF-IHSEPKIGDSLCMLTHSHRFKGDAGIGLLASAVNRA 439
              YS+A+A+QL  LTG  L       +  +GDS+C+L  S+RF  ++GIG LA AVN  
Sbjct: 326 ---YSRARAQQLQRLTGCTLDDSGPEGQSTVGDSICLLRRSYRFDPNSGIGQLALAVNGG 382

Query: 440 DLAGILSVWQSGLAELTWLEHSVDHSQTQAKISEPSNNTGLKALLAQACEQYGDYLRLLQ 499
           D A + +V     A++T               S  +     +A+LAQ  E Y DYL+L+ 
Sbjct: 383 DDARVRAVLNGEFADIT--------------CSPLTEAEEYQAMLAQCVEGYRDYLQLV- 427

Query: 500 PTHATPIHTSEPFCPPSAMEAIAKFNQYRILCAMRTGDYGVEGINLAVTKALAQAKLIQ- 558
              ATP               +  F +YR LCA+R G +GV G+N  + +AL QA LIQ 
Sbjct: 428 AAGATP------------DAVLLAFQRYRQLCALREGPFGVAGLNQRIEQALHQAGLIQR 475

Query: 559 ---PQQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEERADRLMAHFIKADGKLLKVLPA 615
              P   +Y GRP++I+ ND  LGLFNGDIG+ +  E  +  L   F   +G+   V P+
Sbjct: 476 SRNPLNRWYPGRPVMIERNDAALGLFNGDIGIAMIGE--SGELRVFFPLPNGETKDVTPS 533

Query: 616 RLPSHETCYAMTVHKSQGSEFNRVALVLPPAPSLVQWQLLTKELIYTAITRAKQHFSCLG 675
           RLP H+T YAMTVHKSQGSEF+  ALVLP         +LT+EL+YTAITRA+Q  S   
Sbjct: 534 RLPPHDTAYAMTVHKSQGSEFDHTALVLPNH----YLPVLTRELVYTAITRARQRLSLYT 589

Query: 676 TQQVFERASLQATQRASGLADRL 698
             ++  RA    TQR SGL +R+
Sbjct: 590 DVRILCRAVKTPTQRYSGLEERI 612