Pairwise Alignments

Query, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 608 a.a., exodeoxyribonuclease V subunit alpha from Escherichia coli ECRC98

 Score =  387 bits (994), Expect = e-112
 Identities = 270/686 (39%), Positives = 367/686 (53%), Gaps = 92/686 (13%)

Query: 17  LRLKAPLTELLKYWEKERLITALDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQHT 76
           ++L+  L E +++    + +  LD  FAL +A       + P   L  ALLS      H 
Sbjct: 1   MKLQKQLLEAVEH----KQLRPLDVQFALTVA-----GDEHPAVTLAAALLSHDAGEGHV 51

Query: 77  CLVLEYIVPTNPMAEPINRCQIRLS-LTELIDALQHFDAIGAPNSNKPLIFEDGRLYLER 135
           CL L  +         +  C   +  L    + L    A+   +   P+I    RLYL R
Sbjct: 52  CLPLSRLENNEESHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNR 111

Query: 136 YHHFETQVASALTRLSAAALSLTPSQPLASDNQSLLQLRRQLDCLFPSAAHTVEANIDWQ 195
               E  VA     ++ A         +  D   L Q    LD LFP+        I+WQ
Sbjct: 112 MWCNERTVARFFNEVNHA---------IEVDEALLAQT---LDKLFPTGDE-----INWQ 154

Query: 196 KVATATALGNKLAVITGGPGTGKTTTVTKLL--LLQQL-GTPKQIRLVAPTGKAAARLSE 252
           KVA A AL  +++VI+GGPGTGKTTTV KLL  L+Q   G   +IRL APTGKAAARL+E
Sbjct: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214

Query: 253 SIKASKARLEQELQQASKENPQENQVLLTALSRIPEEASTLHRLLGVIPNSAHFRHHQGN 312
           S+   KA  +  L    K+             RIPE+ASTLHRLLG  P S   RHH GN
Sbjct: 215 SL--GKALRQLPLTDEQKK-------------RIPEDASTLHRLLGAQPGSQRLRHHAGN 259

Query: 313 PLRLDLLIVDEASMVDLPMMYKLLSALPEHAGLILLGDQDQLASVEAGAVLADICAGLKQ 372
           PL LD+L+VDEASM+DLPMM +L+ ALP+HA +I LGD+DQLASVEAGAVL DICA    
Sbjct: 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA 319

Query: 373 ASTQHTEWKMRYSQAQAEQLTALTGFNLSHFIHSE-PKIGDSLCMLTHSHRFKGDAGIGL 431
                      ++  +A QL+ LTG ++     +E   + DSLC+L  S+RF  D+GIG 
Sbjct: 320 G----------FTAERAGQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369

Query: 432 LASAVNRADLAGILSVWQSGLAELTWLEHSVDHSQTQAKISEPSNNTGLKALLAQACEQY 491
           LA+A+NR D   + +V+Q             D +  + ++ +   +    A+L +A   Y
Sbjct: 370 LAAAINRGDKTAVKTVFQQ------------DFTDIEKRLLQSGED--YIAMLEEALAGY 415

Query: 492 GDYLRLLQPTHATPIHTSEPFCPPSAMEAIAKFNQYRILCAMRTGDYGVEGINLAVTKAL 551
           G YL LLQ         +EP         I  FN+Y++LCA+R G +GV G+N  + + +
Sbjct: 416 GRYLDLLQA-------RAEPDL------IIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462

Query: 552 AQAKLI--QPQQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEERADRLMAHFIKADGKL 609
            Q + I   P   +Y GRP++I  ND  LGLFNGDIG+ L   +R       F   DG +
Sbjct: 463 QQKRKIHRNPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQGTRVWFAMPDGNI 519

Query: 610 LKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPPAPSLVQWQLLTKELIYTAITRAKQ 669
             V P+RLP HET +AMTVHKSQGSEF+  AL+LP   + V    +T+EL+YTA+TRA++
Sbjct: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV----VTRELVYTAVTRARR 575

Query: 670 HFSCLGTQQVFERASLQATQRASGLA 695
             S    +++   A    T+R SGLA
Sbjct: 576 RLSLYADERILSAAIATRTERRSGLA 601