Pairwise Alignments

Query, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 556 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  248 bits (633), Expect = 4e-70
 Identities = 167/541 (30%), Positives = 263/541 (48%), Gaps = 19/541 (3%)

Query: 4   EESLEQLKRQYLHALPDKKKQIITLWVSL-RKNWQSYMLSAVYREVHNLKGSSETFGLTE 62
           + S E+LK+ +   +  + +QI+ +W  L R  W S  L+ +      L   +E F   E
Sbjct: 6   DPSRERLKQHFAQRVIHQARQILEIWQRLQRSEWSSADLAELSEANLRLLRFAERFEQPE 65

Query: 63  TKDIVDKLELQLKNLLDAPAPTLNLIKGLDTLFHQLLQNNQHYLPAAPVVEAQMQQNPYN 122
              +   +   LK + +       L   L T  ++L+Q     L    + +    +  + 
Sbjct: 66  HSQLARHIGDSLKAVDENRG---RLSSHLITELNRLMQR----LSRTGLRQGDQLEQTFL 118

Query: 123 PSKARHEYCIAIIEDDNNVGAMITKQLHEFGFNVQHFLNFTDFIKVQYASPFDLILLDLI 182
           P   +  Y   ++  D++    + KQL  FG + Q   +   F           I++D+ 
Sbjct: 119 PPMRKPIY---VMLADHDRAERLAKQLEFFGMSAQSLDSVAAFRASMAERLPSAIVMDV- 174

Query: 183 LPDYTEDAL-----FEAACEFEKNNTRVFVLSSRSDFDMRLLAIRANVSEYFVKPAETTL 237
             D+    L      EA    E     +F     +D   RL A+RA   E+     E + 
Sbjct: 175 --DFCGTGLGLKLAAEAQEGLEHKLPLLFFSLHETDTPTRLAAVRAGGQEFLTGTLEASS 232

Query: 238 LVRKIHQWLKMSDKPPLKVLLVDDQQSMVDYFSSLLRSHGLMVRGMTKPEQVIPTLEQFE 297
           L+ KI     ++   P KVL++DD ++   +   LL S G++ R + +P Q +  L  F+
Sbjct: 233 LLEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRSLIEPIQAMAELADFQ 292

Query: 298 PDLFIFDLYMPGVNGLELARMIRQLDKYTSSPILVLSSDDTMQNKVSIIQAGSDDLISKQ 357
           PDL I D+YMP   G ELA++IR  D+Y S PI+ LS++D +  ++  +  G DD ++K 
Sbjct: 293 PDLIILDMYMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKP 352

Query: 358 TAPSLFVTQVISRAQRGHDIRSSASRDSLTGLLNHTQILVAARHCINLAKRANSSVCIAM 417
             P   +T V +RA R   +++   RDSLTGL NHT IL     C   A+R N  +  AM
Sbjct: 353 IKPRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCSFRARRENKPLSFAM 412

Query: 418 LDLDHFKQVNDTYGHSGGDKVLLAFAHLLQQSLRAADFMGRYGGEEFMLVIPDMPAPLVI 477
           LD+DHFK+VND++GH  GD+V+ + A  L+Q LR  D++GRYGGEEF +V+PD       
Sbjct: 413 LDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDYIGRYGGEEFAIVMPDTDLESAC 472

Query: 478 AKVNAIRESFSNIVFVEEGAEFKVTLSGGLAFSTECHEFQECLLLADKNLYEAKRTGRNR 537
             ++ IR  F+ I +  +  +   T S GL    +  +       AD+ LY AK  GRNR
Sbjct: 473 QVLDEIRGRFAEIHYPAQPQDLWCTFSAGLVELCDGSDSLMMAAQADEALYRAKDAGRNR 532

Query: 538 I 538
           +
Sbjct: 533 V 533