Pairwise Alignments

Query, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 493 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  110 bits (274), Expect = 2e-28
 Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 2/183 (1%)

Query: 358 TAPSLFVTQVISRAQRGHDIRSSA--SRDSLTGLLNHTQILVAARHCINLAKRANSSVCI 415
           T  +L V  ++    R H   + A  + DSLTGL N     + A   +  A+R +S +  
Sbjct: 304 TMITLVVLALVHAMVRRHQASTEALATLDSLTGLYNRRSFDLLAAQALREARRDSSPLVA 363

Query: 416 AMLDLDHFKQVNDTYGHSGGDKVLLAFAHLLQQSLRAADFMGRYGGEEFMLVIPDMPAPL 475
            ++DLDHFK +ND +GH  GD+VL  FA++LQ SLR +D + R+GGEEF++++ +     
Sbjct: 364 LLIDLDHFKALNDNHGHLAGDEVLRQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQ 423

Query: 476 VIAKVNAIRESFSNIVFVEEGAEFKVTLSGGLAFSTECHEFQECLLLADKNLYEAKRTGR 535
            I     IR     + F  +    ++T S GL+           L  AD+ LY AK+ GR
Sbjct: 424 AIEVAEKIRRRTEQLTFSYDNQPLRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGR 483

Query: 536 NRI 538
           NR+
Sbjct: 484 NRV 486